C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003MC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041176-ENSDARG00000062416 CGP 7955 15:12916551-12995382
GeneTranscriptPositionBiotype
ENSDARG00000041176 (scn2b)
sodium channel, voltage-gated, type II, beta 		ENSDART00000101293 (scn2b-001) 12916551-12940855 nonsense_mediated_decay
ENSDART00000101294 (scn2b-003) 12916551-12939393 protein_coding
ENSDART00000149064 (scn2b-004) 12916551-12935817 retained_intron
ENSDARG00000062416 (scn4ba)
sodium channel, voltage-gated, type IV, beta a 		ENSDART00000090267 (scn4ba-001) 12961296-12995382 protein_coding
CIL_0003MC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000070304-ENSMUSG00000046480 CGP 10090 9:45117876-45154152
GeneTranscriptPositionBiotype
ENSMUSG00000046480 (Scn4b)
sodium channel, type IV, beta 		ENSMUST00000060125 (Scn4b-001) 45138437-45154152 protein_coding
ENSMUSG00000070304 (Scn2b)
sodium channel, voltage-gated, type II, beta 		ENSMUST00000093855 (Scn2b-201) 45117881-45130068 protein_coding
ENSMUST00000170998 (Scn2b-202) 45117876-45130070 protein_coding
ENSMUSG00000074385 (Gm10684)
predicted gene 10684 		ENSMUST00000098827 (Gm10684-201) 45107176-45135606 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MC_0001ENSDARG00000041176ENSDART00000101293ENSDART00000101294ENSDART00000149064ENSDARG00000062416ENSDART00000090267CIL_0003MC_0002ENSMUSG00000046480ENSMUST00000060125ENSMUSG00000070304ENSMUST00000093855ENSMUST00000170998ENSMUSG00000074385ENSMUST00000098827
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MC_0001ENSDARG00000041176ENSDART00000101293ENSDART00000101294ENSDARG00000062416ENSDART00000090267CIL_0003MC_0002ENSMUSG00000046480ENSMUST00000060125ENSMUSG00000070304ENSMUST00000093855ENSMUST00000170998ENSMUSG00000074385ENSMUST00000098827
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041176 ENSDART00000101293 N/A N/A N/A 27.340±13.56 N/A N/A 0.501±0.25 0.089±0.00 N/A N/A 0.623±0.00 N/A N/A N/A
ENSDART00000101294 N/A N/A N/A N/A N/A N/A 1.727±0.00 0.427±0.00 N/A N/A 0.803±0.00 N/A N/A N/A
ENSDART00000149064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000062416 ENSDART00000090267 N/A N/A N/A N/A N/A N/A 10.511±1.13 0.274±0.22 N/A N/A 1.007±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046480 ENSMUST00000060125 0.246±0.02 0.242±0.09 0.544±0.03 8.392±11.77 6.044±5.10 0.070±0.02 2.524±0.11 6.643±0.24 0.089±0.10 0.389±0.17 73.216±15.76 0.150±0.04 0.025±0.01 0.030±0.01
ENSMUSG00000070304 ENSMUST00000093855 0.315±0.24 0.912±0.33 0.059±0.00 N/A 0.330±0.00 0.375±0.10 0.072±0.05 0.202±0.09 0.035±0.02 0.075±0.02 0.147±0.07 0.392±0.26 0.018±0.00 0.090±0.04
ENSMUST00000170998 0.780±0.68 0.939±0.31 0.112±0.01 13.715±16.40 0.447±0.18 0.475±0.20 0.075±0.03 0.160±0.08 0.099±0.04 0.186±0.08 0.192±0.11 0.774±0.33 0.102±0.06 0.241±0.20
ENSMUSG00000074385 ENSMUST00000098827 0.059±0.02 0.030±0.00 0.095±0.01 0.054±0.05 0.182±0.04 0.123±0.08 0.043±0.01 0.060±0.02 0.026±0.01 0.178±0.04 0.043±0.02 0.113±0.04 0.293±0.19 0.011±0.00

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