C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP39 pre-mRNA processing factor 39 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000042080 prpf39 7955 - 20:54605391-54635746 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000061672 prpf39-001 54605391-54635746 protein_coding
  ENSDART00000134992 prpf39-003 54619053-54626809 processed_transcript
  ENSDART00000135114 prpf39-002 54605391-54635728 nonsense_mediated_decay
  ENSDART00000138067 prpf39-004 54618924-54623531 processed_transcript
  ENSDART00000138624 prpf39-007 54609645-54618491 retained_intron
  ENSDART00000141150 prpf39-005 54618556-54623147 retained_intron
  ENSDART00000148263 prpf39-006 54610426-54622811 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000061672ENSDART00000135114ENSDART00000141150
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000061672 9.748±6.47 6.516±3.47 3.590±0.00 19.653±0.00 11.260±0.00
ENSDART00000135114 N/A 4.167±1.23 N/A 6.592±0.00 4.542±0.00
ENSDART00000141150 N/A N/A 0.667±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HK CIL_0005HK_0001 CGP 20:54605391-54650385

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000185246 PRPF39 pre-mRNA processing factor 39 protein_coding Homo_sapiens
ENSMUSG00000035597 Prpf39 PRP39 pre-mRNA processing factor 39 homolog (yeast) protein_coding Mus_musculus

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