C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP39 pre-mRNA processing factor 39 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035597 Prpf39 10090 + 12:65036333-65063386 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000120580 Prpf39-001 65036333-65063386 protein_coding
  ENSMUST00000129956 Prpf39-002 65036366-65063386 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120580ENSMUST00000129956
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120580 N/A 1.589±0.33 10.770±0.56 8.025±1.94 1.885±0.00 2.466±1.21 2.125±0.42 1.226±0.00 5.558±2.46 4.553±0.00 3.162±0.13 9.946±1.35 7.303±1.27 1.019±0.31
ENSMUST00000129956 1.723±0.00 2.508±0.31 2.825±0.01 N/A 2.118±0.51 1.289±0.06 N/A 1.171±0.00 1.461±0.03 N/A N/A 3.754±1.38 2.700±0.58 0.635±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046Q CIL_00046Q_0002 CGP 12:64965742-65063386
CIL_0005HK CIL_0005HK_0003 CGP 12:65036333-65073944

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042080 prpf39 PRP39 pre-mRNA processing factor 39 homolog (yeast) protein_coding Danio_rerio
ENSG00000185246 PRPF39 pre-mRNA processing factor 39 protein_coding Homo_sapiens

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