C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-mRNA processing factor 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185246 PRPF39 9606 + 14:45084099-45116282 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355765 PRPF39-003 45084099-45115601 protein_coding
  ENST00000424478 PRPF39-001 45084128-45115601 nonsense_mediated_decay
  ENST00000477626 PRPF39-002 45084118-45115601 retained_intron
  ENST00000553605 PRPF39-009 45084107-45096228 protein_coding
  ENST00000554081 PRPF39-007 45096198-45116282 nonsense_mediated_decay
  ENST00000554429 PRPF39-006 45095239-45115601 nonsense_mediated_decay
  ENST00000554439 PRPF39-004 45095221-45115634 nonsense_mediated_decay
  ENST00000554785 PRPF39-008 45109732-45115596 retained_intron
  ENST00000556353 PRPF39-013 45095446-45096866 retained_intron
  ENST00000556718 PRPF39-012 45109743-45110669 retained_intron
  ENST00000556782 PRPF39-010 45084118-45095733 retained_intron
  ENST00000557477 PRPF39-011 45096906-45110176 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355765ENST00000424478ENST00000477626ENST00000554429ENST00000554439
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355765 1.651±0.00 2.376±0.00 N/A 3.915±0.00 4.300±0.00 2.946±0.74 0.655±0.00 5.545±0.00 N/A 1.407±0.00 1.133±0.00 8.502±0.92 2.925±1.38 5.995±0.90
ENST00000424478 N/A N/A 2.062±0.00 N/A N/A N/A 0.628±0.00 N/A N/A 1.762±0.00 N/A N/A N/A N/A
ENST00000477626 N/A 1.722±0.00 N/A 2.195±0.00 2.492±0.00 4.081±0.00 N/A 1.630±0.00 N/A 2.195±0.00 N/A 2.298±0.00 N/A N/A
ENST00000554429 N/A 2.862±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554439 N/A N/A N/A N/A 1.614±0.00 N/A N/A N/A 1.556±0.00 1.936±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046Q CIL_00046Q_0001 CGP 14:44962208-45116282
CIL_0005HK CIL_0005HK_0002 CGP 14:45084099-45135319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042080 prpf39 PRP39 pre-mRNA processing factor 39 homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000035597 Prpf39 PRP39 pre-mRNA processing factor 39 homolog (yeast) protein_coding Mus_musculus

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