C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005HK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000042080-ENSDARG00000079018 CGP 7955 20:54605391-54650385
GeneTranscriptPositionBiotype
ENSDARG00000042080 (prpf39)
PRP39 pre-mRNA processing factor 39 homolog (yeast) 		ENSDART00000061672 (prpf39-001) 54605391-54635746 protein_coding
ENSDART00000134992 (prpf39-003) 54619053-54626809 processed_transcript
ENSDART00000135114 (prpf39-002) 54605391-54635728 nonsense_mediated_decay
ENSDART00000138067 (prpf39-004) 54618924-54623531 processed_transcript
ENSDART00000138624 (prpf39-007) 54609645-54618491 retained_intron
ENSDART00000141150 (prpf39-005) 54618556-54623147 retained_intron
ENSDART00000148263 (prpf39-006) 54610426-54622811 processed_transcript
ENSDARG00000079018 (fkbp3)
FK506 binding protein 3 		ENSDART00000114387 (fkbp3-201) 54639716-54650385 protein_coding
ENSDART00000127321 (fkbp3-202) 54639716-54650385 protein_coding
ENSDART00000144632 (fkbp3-001) 54639613-54641838 protein_coding
CIL_0005HK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185246-ENSG00000100442 CGP 9606 14:45084099-45135319
GeneTranscriptPositionBiotype
ENSG00000185246 (PRPF39)
pre-mRNA processing factor 39 		ENST00000355765 (PRPF39-003) 45084099-45115601 protein_coding
ENST00000424478 (PRPF39-001) 45084128-45115601 nonsense_mediated_decay
ENST00000477626 (PRPF39-002) 45084118-45115601 retained_intron
ENST00000553605 (PRPF39-009) 45084107-45096228 protein_coding
ENST00000554081 (PRPF39-007) 45096198-45116282 nonsense_mediated_decay
ENST00000554429 (PRPF39-006) 45095239-45115601 nonsense_mediated_decay
ENST00000554439 (PRPF39-004) 45095221-45115634 nonsense_mediated_decay
ENST00000554785 (PRPF39-008) 45109732-45115596 retained_intron
ENST00000556353 (PRPF39-013) 45095446-45096866 retained_intron
ENST00000556718 (PRPF39-012) 45109743-45110669 retained_intron
ENST00000556782 (PRPF39-010) 45084118-45095733 retained_intron
ENST00000557477 (PRPF39-011) 45096906-45110176 nonsense_mediated_decay
ENSG00000239043 (SNORD127)
small nucleolar RNA, C/D box 127 		ENST00000458892 (SNORD127-201) 45110883-45110968 snoRNA
CIL_0005HK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035597-ENSMUSG00000020949 CGP 10090 12:65036333-65073944
GeneTranscriptPositionBiotype
ENSMUSG00000020949 (Fkbp3)
FK506 binding protein 3 		ENSMUST00000021332 (Fkbp3-201) 65062436-65073944 protein_coding
ENSMUSG00000035597 (Prpf39)
PRP39 pre-mRNA processing factor 39 homolog (yeast) 		ENSMUST00000120580 (Prpf39-001) 65036333-65063386 protein_coding
ENSMUST00000129956 (Prpf39-002) 65036366-65063386 nonsense_mediated_decay
ENSMUSG00000087790 (Gm25970)
predicted gene, 25970 		ENSMUST00000157165 (Gm25970-201) 65056573-65056658 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005HK_0001ENSDARG00000042080ENSDART00000061672ENSDART00000134992ENSDART00000135114ENSDART00000138067ENSDART00000138624ENSDART00000141150ENSDART00000148263ENSDARG00000079018ENSDART00000114387ENSDART00000127321ENSDART00000144632CIL_0005HK_0002ENSG00000185246ENST00000355765ENST00000424478ENST00000477626ENST00000553605ENST00000554081ENST00000554429ENST00000554439ENST00000554785ENST00000556353ENST00000556718ENST00000556782ENST00000557477ENSG00000239043ENST00000458892CIL_0005HK_0003ENSMUSG00000020949ENSMUST00000021332ENSMUSG00000035597ENSMUST00000120580ENSMUST00000129956ENSMUSG00000087790ENSMUST00000157165
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005HK_0001ENSDARG00000042080ENSDART00000061672ENSDART00000135114ENSDART00000141150ENSDARG00000079018ENSDART00000114387ENSDART00000127321ENSDART00000144632CIL_0005HK_0002ENSG00000185246ENST00000355765ENST00000424478ENST00000477626ENST00000554429ENST00000554439ENSG00000239043ENST00000458892CIL_0005HK_0003ENSMUSG00000020949ENSMUST00000021332ENSMUSG00000035597ENSMUST00000120580ENSMUST00000129956ENSMUSG00000087790ENSMUST00000157165
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042080 ENSDART00000061672 N/A N/A N/A 9.748±6.47 N/A N/A 6.516±3.47 3.590±0.00 19.653±0.00 N/A 11.260±0.00 N/A N/A N/A
ENSDART00000134992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135114 N/A N/A N/A N/A N/A N/A 4.167±1.23 N/A 6.592±0.00 N/A 4.542±0.00 N/A N/A N/A
ENSDART00000138067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141150 N/A N/A N/A N/A N/A N/A N/A 0.667±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000148263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000079018 ENSDART00000114387 N/A N/A N/A 96.742±42.97 N/A N/A 188.711±105.16 45.462±0.00 6.882±0.00 N/A 90.047±0.00 N/A N/A N/A
ENSDART00000127321 N/A N/A N/A N/A N/A N/A N/A 0.259±0.00 2.206±0.00 N/A N/A N/A N/A N/A
ENSDART00000144632 N/A N/A N/A 68.496±0.00 N/A N/A 524.658±560.20 73.813±57.02 12.244±0.00 N/A 109.345±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185246 ENST00000355765 1.651±0.00 2.376±0.00 N/A 3.915±0.00 4.300±0.00 2.946±0.74 0.655±0.00 5.545±0.00 N/A 1.407±0.00 1.133±0.00 8.502±0.92 2.925±1.38 5.995±0.90
ENST00000424478 N/A N/A 2.062±0.00 N/A N/A N/A 0.628±0.00 N/A N/A 1.762±0.00 N/A N/A N/A N/A
ENST00000477626 N/A 1.722±0.00 N/A 2.195±0.00 2.492±0.00 4.081±0.00 N/A 1.630±0.00 N/A 2.195±0.00 N/A 2.298±0.00 N/A N/A
ENST00000553605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554429 N/A 2.862±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554439 N/A N/A N/A N/A 1.614±0.00 N/A N/A N/A 1.556±0.00 1.936±0.00 N/A N/A N/A N/A
ENST00000554785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239043 ENST00000458892 N/A 0.469±0.00 N/A 0.221±0.00 N/A N/A 0.226±0.00 N/A N/A N/A N/A N/A 1.986±0.00 0.853±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020949 ENSMUST00000021332 9.022±1.57 10.302±1.03 31.634±0.80 89.693±32.60 8.927±1.11 4.525±0.31 60.601±6.67 17.657±5.29 32.742±27.46 9.912±1.69 104.439±7.07 41.479±34.76 78.337±23.15 10.124±8.98
ENSMUSG00000035597 ENSMUST00000120580 N/A 1.589±0.33 10.770±0.56 8.025±1.94 1.885±0.00 2.466±1.21 2.125±0.42 1.226±0.00 5.558±2.46 4.553±0.00 3.162±0.13 9.946±1.35 7.303±1.27 1.019±0.31
ENSMUST00000129956 1.723±0.00 2.508±0.31 2.825±0.01 N/A 2.118±0.51 1.289±0.06 N/A 1.171±0.00 1.461±0.03 N/A N/A 3.754±1.38 2.700±0.58 0.635±0.00
ENSMUSG00000087790 ENSMUST00000157165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 121.535±0.00 N/A

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