C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif, single stranded interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000044574 rbms3 7955 - 16:42304456-42567183 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000125804 rbms3-201 42304456-42567175 protein_coding
  ENSDART00000132562 rbms3-005 42408763-42525446 retained_intron
  ENSDART00000136719 rbms3-006 42312839-42567183 protein_coding
  ENSDART00000136766 rbms3-004 42411688-42525234 protein_coding
  ENSDART00000137079 rbms3-002 42351759-42525277 protein_coding
  ENSDART00000138388 rbms3-001 42309786-42525637 protein_coding
  ENSDART00000139089 rbms3-003 42408899-42525237 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000125804ENSDART00000136719ENSDART00000136766
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000125804 8.621±1.96 13.036±4.84 2.343±1.46 N/A 2.234±0.00
ENSDART00000136719 N/A N/A N/A 0.265±0.00 N/A
ENSDART00000136766 N/A N/A N/A 0.384±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028F CIL_00028F_0001 CGP 16:42171681-42567183

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000144642 RBMS3 RNA binding motif, single stranded interacting protein 3 protein_coding Homo_sapiens
ENSMUSG00000039607 Rbms3 RNA binding motif, single stranded interacting protein protein_coding Mus_musculus

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