C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif, single stranded interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039607 Rbms3 10090 - 9:116572746-117629913 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044901 Rbms3-002 116578515-117252483 protein_coding
  ENSMUST00000068962 Rbms3-006 116577299-117252479 protein_coding
  ENSMUST00000069095 Rbms3-005 116678273-117252482 retained_intron
  ENSMUST00000084824 Rbms3-003 116943123-117251597 processed_transcript
  ENSMUST00000111772 Rbms3-008 116578026-117252117 protein_coding
  ENSMUST00000111773 Rbms3-001 116572746-117252463 protein_coding
  ENSMUST00000164018 Rbms3-012 116578025-117629913 protein_coding
  ENSMUST00000172469 Rbms3-011 116582822-116822819 protein_coding
  ENSMUST00000172564 Rbms3-010 116805413-117251801 protein_coding
  ENSMUST00000173429 Rbms3-007 116577582-116822806 protein_coding
  ENSMUST00000174276 Rbms3-004 116848247-117252479 processed_transcript
  ENSMUST00000174868 Rbms3-009 116578025-117252126 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044901ENSMUST00000068962ENSMUST00000111772ENSMUST00000111773ENSMUST00000164018ENSMUST00000172469ENSMUST00000173429ENSMUST00000174868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044901 3.070±0.00 N/A N/A N/A 3.173±0.48 1.839±0.00 1.728±0.05 3.167±0.00 0.430±0.13 N/A N/A 4.579±0.25 0.126±0.00 0.365±0.00
ENSMUST00000068962 N/A 1.183±0.00 N/A N/A 3.544±0.56 1.247±0.35 N/A 2.347±0.00 0.485±0.00 5.138±0.62 N/A 4.295±1.05 N/A 0.285±0.00
ENSMUST00000111772 13.710±5.44 6.826±0.91 N/A N/A 8.136±1.71 4.584±1.09 2.659±0.74 6.321±0.70 1.019±0.39 15.514±4.58 N/A 17.233±4.68 N/A 0.313±0.15
ENSMUST00000111773 2.898±0.90 1.471±0.30 6.633±0.95 7.531±0.00 2.472±0.39 0.971±0.15 1.365±0.00 1.712±0.52 0.346±0.16 6.013±2.45 0.260±0.00 2.893±1.14 0.513±0.38 0.178±0.00
ENSMUST00000164018 2.865±0.00 N/A N/A N/A 2.423±0.00 2.456±0.51 N/A 2.201±0.00 N/A N/A N/A 5.638±0.90 N/A 0.177±0.03
ENSMUST00000172469 N/A N/A N/A N/A N/A N/A N/A 9.120±0.00 N/A N/A N/A 20.104±5.71 N/A 0.583±0.00
ENSMUST00000173429 N/A 4.797±0.55 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.342±2.54 N/A N/A
ENSMUST00000174868 N/A N/A N/A N/A 2.795±0.00 1.318±0.00 N/A N/A N/A N/A N/A 5.597±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028F CIL_00028F_0002 CGP 9:116087698-117629913

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005737 IEA cytoplasm
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044574 rbms3 RNA binding motif, single stranded interacting protein protein_coding Danio_rerio
ENSG00000144642 RBMS3 RNA binding motif, single stranded interacting protein 3 protein_coding Homo_sapiens

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