C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif, single stranded interacting protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144642 RBMS3 9606 + 3:29280982-30010391 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273139 RBMS3-007 29281452-29991318 protein_coding
  ENST00000383766 RBMS3-005 29281452-30005129 protein_coding
  ENST00000383767 RBMS3-001 29281346-30004076 protein_coding
  ENST00000434693 RBMS3-002 29280982-30010391 protein_coding
  ENST00000445033 RBMS3-004 29281373-29884228 protein_coding
  ENST00000452462 RBMS3-008 29281552-30004013 protein_coding
  ENST00000456853 RBMS3-006 29281616-29991239 protein_coding
  ENST00000471426 RBMS3-009 29281073-29435009 retained_intron
  ENST00000473799 RBMS3-014 29924751-29991197 processed_transcript
  ENST00000478716 RBMS3-012 29698193-29739849 processed_transcript
  ENST00000497205 RBMS3-011 29434857-29739922 retained_intron
  ENST00000497274 RBMS3-015 29988073-29991715 processed_transcript
  ENST00000497319 RBMS3-013 29762923-29903238 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000273139ENST00000383766ENST00000434693ENST00000445033ENST00000497205
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000273139 N/A N/A N/A N/A N/A N/A N/A 1.294±0.00 N/A N/A N/A
ENST00000383766 1.062±0.00 N/A N/A 1.360±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000434693 1.113±0.00 0.616±0.00 2.526±0.47 1.312±0.42 1.101±0.16 0.929±0.00 1.515±0.00 N/A 2.645±1.69 0.824±0.63 1.005±0.71
ENST00000445033 N/A N/A N/A N/A N/A 1.976±0.00 N/A N/A N/A N/A N/A
ENST00000497205 9.479±0.00 N/A N/A N/A N/A 9.939±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005737 IEA cytoplasm
GO:0045727 IEA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044574 rbms3 RNA binding motif, single stranded interacting protein protein_coding Danio_rerio
ENSMUSG00000039607 Rbms3 RNA binding motif, single stranded interacting protein protein_coding Mus_musculus

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