C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00028F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000034541-ENSDARG00000044574 CGP 7955 16:42171681-42567183
GeneTranscriptPositionBiotype
ENSDARG00000034541 (tgfbr2)
transforming growth factor, beta receptor II 		ENSDART00000039832 (tgfbr2-001) 42171681-42237350 protein_coding
ENSDART00000146301 (tgfbr2-002) 42224304-42272179 processed_transcript
ENSDARG00000044574 (rbms3)
RNA binding motif, single stranded interacting protein 		ENSDART00000125804 (rbms3-201) 42304456-42567175 protein_coding
ENSDART00000132562 (rbms3-005) 42408763-42525446 retained_intron
ENSDART00000136719 (rbms3-006) 42312839-42567183 protein_coding
ENSDART00000136766 (rbms3-004) 42411688-42525234 protein_coding
ENSDART00000137079 (rbms3-002) 42351759-42525277 protein_coding
ENSDART00000138388 (rbms3-001) 42309786-42525637 protein_coding
ENSDART00000139089 (rbms3-003) 42408899-42525237 retained_intron
ENSDARG00000083807 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000119207 (5S_rRNA.372-201) 42551652-42551769 rRNA
ENSDARG00000097794 (si:dkey-103m22.1)
si:dkey-103m22.1 		ENSDART00000156350 (si:dkey-103m22.1-001) 42525190-42568456 antisense
ENSDART00000157384 (si:dkey-103m22.1-002) 42526246-42559181 antisense
CIL_00028F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032440-ENSMUSG00000039607 CGP 10090 9:116087698-117629913
GeneTranscriptPositionBiotype
ENSMUSG00000032440 (Tgfbr2)
transforming growth factor, beta receptor II 		ENSMUST00000035014 (Tgfbr2-201) 116087698-116175363 protein_coding
ENSMUST00000061101 (Tgfbr2-202) 116087698-116175363 protein_coding
ENSMUSG00000039607 (Rbms3)
RNA binding motif, single stranded interacting protein 		ENSMUST00000044901 (Rbms3-002) 116578515-117252483 protein_coding
ENSMUST00000068962 (Rbms3-006) 116577299-117252479 protein_coding
ENSMUST00000069095 (Rbms3-005) 116678273-117252482 retained_intron
ENSMUST00000084824 (Rbms3-003) 116943123-117251597 processed_transcript
ENSMUST00000111772 (Rbms3-008) 116578026-117252117 protein_coding
ENSMUST00000111773 (Rbms3-001) 116572746-117252463 protein_coding
ENSMUST00000164018 (Rbms3-012) 116578025-117629913 protein_coding
ENSMUST00000172469 (Rbms3-011) 116582822-116822819 protein_coding
ENSMUST00000172564 (Rbms3-010) 116805413-117251801 protein_coding
ENSMUST00000173429 (Rbms3-007) 116577582-116822806 protein_coding
ENSMUST00000174276 (Rbms3-004) 116848247-117252479 processed_transcript
ENSMUST00000174868 (Rbms3-009) 116578025-117252126 protein_coding
ENSMUSG00000079669 (Gm17396)
predicted gene, 17396 		ENSMUST00000172075 (Gm17396-001) 117252536-117254696 processed_transcript
ENSMUSG00000092184 (Gm18489)
predicted gene, 18489 		ENSMUST00000172565 (Gm18489-001) 117059158-117059708 processed_pseudogene
ENSMUSG00000092504 (Gm20396)
predicted gene 20396 		ENSMUST00000173358 (Gm20396-001) 117402979-117404342 processed_pseudogene
ENSMUSG00000092516 (Gm20397)
predicted gene 20397 		ENSMUST00000174520 (Gm20397-001) 117065527-117065888 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028F_0001ENSDARG00000034541ENSDART00000039832ENSDART00000146301ENSDARG00000044574ENSDART00000125804ENSDART00000132562ENSDART00000136719ENSDART00000136766ENSDART00000137079ENSDART00000138388ENSDART00000139089ENSDARG00000083807ENSDART00000119207ENSDARG00000097794ENSDART00000156350ENSDART00000157384CIL_00028F_0002ENSMUSG00000032440ENSMUST00000035014ENSMUST00000061101ENSMUSG00000039607ENSMUST00000044901ENSMUST00000068962ENSMUST00000069095ENSMUST00000084824ENSMUST00000111772ENSMUST00000111773ENSMUST00000164018ENSMUST00000172469ENSMUST00000172564ENSMUST00000173429ENSMUST00000174276ENSMUST00000174868ENSMUSG00000079669ENSMUST00000172075ENSMUSG00000092184ENSMUST00000172565ENSMUSG00000092504ENSMUST00000173358ENSMUSG00000092516ENSMUST00000174520
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028F_0001ENSDARG00000034541ENSDART00000039832ENSDARG00000044574ENSDART00000125804ENSDART00000136719ENSDART00000136766ENSDARG00000083807ENSDART00000119207ENSDARG00000097794ENSDART00000156350CIL_00028F_0002ENSMUSG00000032440ENSMUST00000035014ENSMUST00000061101ENSMUSG00000039607ENSMUST00000044901ENSMUST00000068962ENSMUST00000111772ENSMUST00000111773ENSMUST00000164018ENSMUST00000172469ENSMUST00000173429ENSMUST00000174868ENSMUSG00000079669ENSMUST00000172075ENSMUSG00000092184ENSMUST00000172565ENSMUSG00000092504ENSMUST00000173358ENSMUSG00000092516ENSMUST00000174520
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034541 ENSDART00000039832 N/A N/A N/A 1.457±1.09 N/A N/A 21.011±2.49 4.474±0.00 0.669±0.00 N/A 15.151±0.00 N/A N/A N/A
ENSDART00000146301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000044574 ENSDART00000125804 N/A N/A N/A 8.621±1.96 N/A N/A 13.036±4.84 2.343±1.46 N/A N/A 2.234±0.00 N/A N/A N/A
ENSDART00000132562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136719 N/A N/A N/A N/A N/A N/A N/A N/A 0.265±0.00 N/A N/A N/A N/A N/A
ENSDART00000136766 N/A N/A N/A N/A N/A N/A N/A N/A 0.384±0.00 N/A N/A N/A N/A N/A
ENSDART00000137079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000083807 ENSDART00000119207 N/A N/A N/A N/A N/A N/A N/A 104.346±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000097794 ENSDART00000156350 N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A
ENSDART00000157384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032440 ENSMUST00000035014 41.447±15.84 30.306±2.12 23.665±1.40 2.378±0.24 43.934±19.76 25.404±1.78 5.871±0.75 13.638±1.76 2.651±0.60 46.618±4.06 4.404±0.56 30.222±9.81 9.832±2.51 0.399±0.15
ENSMUST00000061101 26.087±6.87 8.472±1.76 19.296±0.20 1.438±0.11 24.549±1.41 10.937±0.97 5.591±0.53 8.620±1.31 1.248±0.63 28.549±0.08 1.760±0.56 8.532±2.65 5.715±2.09 0.423±0.06
ENSMUSG00000039607 ENSMUST00000044901 3.070±0.00 N/A N/A N/A 3.173±0.48 1.839±0.00 1.728±0.05 3.167±0.00 0.430±0.13 N/A N/A 4.579±0.25 0.126±0.00 0.365±0.00
ENSMUST00000068962 N/A 1.183±0.00 N/A N/A 3.544±0.56 1.247±0.35 N/A 2.347±0.00 0.485±0.00 5.138±0.62 N/A 4.295±1.05 N/A 0.285±0.00
ENSMUST00000069095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000084824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000111772 13.710±5.44 6.826±0.91 N/A N/A 8.136±1.71 4.584±1.09 2.659±0.74 6.321±0.70 1.019±0.39 15.514±4.58 N/A 17.233±4.68 N/A 0.313±0.15
ENSMUST00000111773 2.898±0.90 1.471±0.30 6.633±0.95 7.531±0.00 2.472±0.39 0.971±0.15 1.365±0.00 1.712±0.52 0.346±0.16 6.013±2.45 0.260±0.00 2.893±1.14 0.513±0.38 0.178±0.00
ENSMUST00000164018 2.865±0.00 N/A N/A N/A 2.423±0.00 2.456±0.51 N/A 2.201±0.00 N/A N/A N/A 5.638±0.90 N/A 0.177±0.03
ENSMUST00000172469 N/A N/A N/A N/A N/A N/A N/A 9.120±0.00 N/A N/A N/A 20.104±5.71 N/A 0.583±0.00
ENSMUST00000172564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173429 N/A 4.797±0.55 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.342±2.54 N/A N/A
ENSMUST00000174276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174868 N/A N/A N/A N/A 2.795±0.00 1.318±0.00 N/A N/A N/A N/A N/A 5.597±0.00 N/A N/A
ENSMUSG00000079669 ENSMUST00000172075 2.363±0.71 0.471±0.17 2.241±0.00 0.812±0.40 0.617±0.21 0.408±0.15 0.415±0.17 1.124±0.13 0.210±0.10 2.339±0.21 0.300±0.09 1.158±0.28 0.086±0.04 0.083±0.07
ENSMUSG00000092184 ENSMUST00000172565 0.324±0.18 N/A N/A N/A 0.344±0.17 0.200±0.07 N/A 0.115±0.05 0.102±0.01 0.355±0.37 N/A 0.537±0.16 0.057±0.03 N/A
ENSMUSG00000092504 ENSMUST00000173358 N/A N/A N/A 0.050±0.02 N/A N/A N/A N/A N/A N/A N/A 0.222±0.04 N/A N/A
ENSMUSG00000092516 ENSMUST00000174520 0.230±0.08 N/A 0.072±0.00 0.117±0.08 N/A N/A N/A 0.281±0.10 0.061±0.00 0.212±0.03 N/A N/A 0.023±0.00 N/A

Loading