C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box gene 6a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000045045 pax6a 7955 - 25:15289718-15409410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000066224 pax6a-201 15289722-15409410 protein_coding
  ENSDART00000066225 pax6a-002 15289718-15310371 protein_coding
  ENSDART00000124577 pax6a-202 15289722-15305832 protein_coding
  ENSDART00000128877 pax6a-203 15289722-15305832 protein_coding
  ENSDART00000129319 pax6a-204 15290670-15305832 protein_coding
  ENSDART00000131523 pax6a-005 15290408-15306040 protein_coding
  ENSDART00000132425 pax6a-006 15295204-15306015 protein_coding
  ENSDART00000133390 pax6a-009 15294637-15301046 protein_coding
  ENSDART00000133941 pax6a-003 15299740-15310426 protein_coding
  ENSDART00000139544 pax6a-008 15294633-15301119 protein_coding
  ENSDART00000144597 pax6a-007 15299602-15306117 protein_coding
  ENSDART00000148420 pax6a-001 15289718-15310396 protein_coding
  ENSDART00000148771 pax6a-010 15300171-15301036 retained_intron
  ENSDART00000149131 pax6a-004 15300376-15310458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMuscleENSDART00000066224ENSDART00000124577ENSDART00000131523
Transcript ID Brain Kidney Muscle
ENSDART00000066224 0.633±0.00 N/A N/A
ENSDART00000124577 14.845±9.69 0.077±0.00 0.266±0.00
ENSDART00000131523 N/A N/A 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JA CIL_0007JA_0006 UCNEbase 25:15074419-15472105

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0009952 IMP anterior/posterior pattern specification
GO:0030900 IGI forebrain development
GO:0030902 IMP hindbrain development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000007372 PAX6 paired box 6 protein_coding Homo_sapiens
ENSMUSG00000027168 Pax6 paired box 6 protein_coding Mus_musculus

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