Source ID |
Type |
Tax ID |
Position |
PAX6 |
UCNEbase |
9606 |
11:31819125-31842092 |
Gene | Transcript | Position | Biotype |
Notice (8): Undefined index: CIL_0007JA_0003 [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000109911' => 'elongator acetyltransferase complex subunit 4',
'ENSG00000148950' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSG00000170946' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSG00000170959' => 'doublecortin domain containing 1',
'ENSG00000221338' => null,
'ENSG00000221629' => null,
'ENSG00000228061' => null,
'ENSG00000255370' => 'cytochrome c, somatic pseudogene 25',
'ENSG00000255525' => null,
'ENSG00000007372' => 'paired box 6',
'ENSG00000049449' => 'reticulocalbin 1, EF-hand calcium binding domain',
'ENSG00000212551' => 'Small nucleolar RNA U3',
'ENSG00000227160' => 'thioesterase superfamily member 7, pseudogene',
'ENSG00000254584' => null,
'ENSG00000254627' => null,
'ENSG00000254836' => null,
'ENSG00000255252' => null,
'ENSG00000255375' => null,
'ENSG00000255490' => 'eukaryotic translation initiation factor 4A2 pseudogene 5',
'ENSMUSG00000005973' => 'reticulocalbin 1',
'ENSMUSG00000027166' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSMUSG00000027167' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSMUSG00000027168' => 'paired box 6',
'ENSMUSG00000042670' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSMUSG00000055312' => 'thioesterase superfamily member 7',
'ENSMUSG00000074981' => 'doublecortin domain containing 5',
'ENSMUSG00000080859' => 'ribosomal protein L10, pseudogene 1',
'ENSMUSG00000081258' => 'predicted gene 14013',
'ENSMUSG00000081701' => 'predicted gene 13890',
'ENSMUSG00000083425' => 'predicted gene 13992',
'ENSMUSG00000084571' => 'nuclear encoded rRNA 5S 201',
'ENSMUSG00000084870' => 'predicted gene 13954',
'ENSMUSG00000086029' => 'paired box 6 opposite strand 1',
'ENSMUSG00000086764' => 'RIKEN cDNA 4930527A07 gene',
'ENSMUSG00000087225' => 'predicted gene 14014',
'ENSMUSG00000087226' => 'predicted gene 14015',
'ENSMUSG00000093363' => 'predicted gene, 22002',
'ENSMUSG00000100156' => 'predicted gene 29053',
'ENSDARG00000023927' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSDARG00000045045' => 'paired box gene 6a',
'ENSDARG00000084014' => '5S ribosomal RNA',
'ENSDARG00000084915' => '5S ribosomal RNA',
'ENSDARG00000008852' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSDARG00000045935' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSDARG00000054184' => 'bloodthirsty-related gene family, member 6',
'ENSDARG00000060962' => 'bloodthirsty-related gene family, member 4',
'ENSDARG00000074813' => 'bloodthirsty-related gene family, member 5',
'ENSDARG00000084280' => '5S ribosomal RNA',
'ENSDARG00000084639' => '5S ribosomal RNA',
'ENSDARG00000094877' => 'bloodthirsty-related gene family, member 7'
),
'gene_name_arr' => array(
'ENSG00000109911' => 'ELP4',
'ENSG00000148950' => 'IMMP1L',
'ENSG00000170946' => 'DNAJC24',
'ENSG00000170959' => 'DCDC1',
'ENSG00000221338' => 'AC108456.1',
'ENSG00000221629' => 'AL162614.1',
'ENSG00000228061' => 'Z83001.1',
'ENSG00000255370' => 'CYCSP25',
'ENSG00000255525' => 'RP1-296L11.1',
'ENSG00000007372' => 'PAX6',
'ENSG00000049449' => 'RCN1',
'ENSG00000212551' => 'U3',
'ENSG00000227160' => 'THEM7P',
'ENSG00000254584' => 'RP1-17K7.2',
'ENSG00000254627' => 'RP1-17K7.1',
'ENSG00000254836' => 'RP1-17K7.3',
'ENSG00000255252' => 'RP1-65P5.3',
'ENSG00000255375' => 'RP1-65P5.5',
'ENSG00000255490' => 'EIF4A2P5',
'ENSMUSG00000005973' => 'Rcn1',
'ENSMUSG00000027166' => 'Dnajc24',
'ENSMUSG00000027167' => 'Elp4',
'ENSMUSG00000027168' => 'Pax6',
'ENSMUSG00000042670' => 'Immp1l',
'ENSMUSG00000055312' => 'Them7',
'ENSMUSG00000074981' => 'Dcdc5',
'ENSMUSG00000080859' => 'Rpl10-ps1',
'ENSMUSG00000081258' => 'Gm14013',
'ENSMUSG00000081701' => 'Gm13890',
'ENSMUSG00000083425' => 'Gm13992',
'ENSMUSG00000084571' => 'n-R5s201',
'ENSMUSG00000084870' => 'Gm13954',
'ENSMUSG00000086029' => 'Pax6os1',
'ENSMUSG00000086764' => '4930527A07Rik',
'ENSMUSG00000087225' => 'Gm14014',
'ENSMUSG00000087226' => 'Gm14015',
'ENSMUSG00000093363' => 'Gm22002',
'ENSMUSG00000100156' => 'RP23-245K23.3',
'ENSDARG00000023927' => 'dnajc24',
'ENSDARG00000045045' => 'pax6a',
'ENSDARG00000084014' => '5S_rRNA',
'ENSDARG00000084915' => '5S_rRNA',
'ENSDARG00000008852' => 'elp4',
'ENSDARG00000045935' => 'immp1l',
'ENSDARG00000054184' => 'btr06',
'ENSDARG00000060962' => 'btr04',
'ENSDARG00000074813' => 'btr05',
'ENSDARG00000084280' => '5S_rRNA',
'ENSDARG00000084639' => '5S_rRNA',
'ENSDARG00000094877' => 'btr07'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 71 => 'Brain',
(int) 136 => 'Breast',
(int) 172 => 'Colon',
(int) 211 => 'Heart',
(int) 257 => 'Kidney',
(int) 301 => 'Liver',
(int) 350 => 'Lung',
(int) 389 => 'Muscle',
(int) 429 => 'Ovary',
(int) 475 => 'Placenta',
(int) 515 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 203,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000350638' => array(
'start' => '31509750',
'end' => '31783998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-001'
),
'ENST00000379163' => array(
'start' => '31509770',
'end' => '31783771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-004'
),
'ENST00000395934' => array(
'start' => '31509778',
'end' => '31783775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-003'
),
'ENST00000474374' => array(
'start' => '31509771',
'end' => '31650221',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ELP4-002'
),
'ENST00000278200' => array(
'start' => '31432402',
'end' => '31509622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-001'
),
'ENST00000526776' => array(
'start' => '31432401',
'end' => '31509574',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-012'
),
'ENST00000527184' => array(
'start' => '31449030',
'end' => '31509592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-013'
),
'ENST00000528161' => array(
'start' => '31452198',
'end' => '31509563',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-004'
),
'ENST00000529749' => array(
'start' => '31456260',
'end' => '31509603',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-011'
),
'ENST00000530023' => array(
'start' => '31456293',
'end' => '31509632',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-006'
),
'ENST00000531331' => array(
'start' => '31432401',
'end' => '31456338',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'IMMP1L-014'
),
'ENST00000531693' => array(
'start' => '31456313',
'end' => '31509578',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-008'
),
'ENST00000532287' => array(
'start' => '31432401',
'end' => '31509574',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-002'
),
'ENST00000532624' => array(
'start' => '31452545',
'end' => '31509605',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-003'
),
'ENST00000532668' => array(
'start' => '31477115',
'end' => '31509608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IMMP1L-010'
),
'ENST00000533512' => array(
'start' => '31432402',
'end' => '31433755',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IMMP1L-015'
),
'ENST00000533642' => array(
'start' => '31432493',
'end' => '31509645',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-005'
),
'ENST00000533921' => array(
'start' => '31488197',
'end' => '31509595',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-007'
),
'ENST00000534812' => array(
'start' => '31432401',
'end' => '31509592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-009'
),
'ENST00000395949' => array(
'start' => '31426287',
'end' => '31430703',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-011'
),
'ENST00000465995' => array(
'start' => '31369840',
'end' => '31431849',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC24-001'
),
'ENST00000524747' => array(
'start' => '31422065',
'end' => '31429866',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-012'
),
'ENST00000525511' => array(
'start' => '31369848',
'end' => '31414906',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-006'
),
'ENST00000526042' => array(
'start' => '31369857',
'end' => '31427978',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-003'
),
'ENST00000526529' => array(
'start' => '31369864',
'end' => '31408319',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-008'
),
'ENST00000527601' => array(
'start' => '31369840',
'end' => '31385100',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-007'
),
'ENST00000527731' => array(
'start' => '31370807',
'end' => '31426385',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-010'
),
'ENST00000529086' => array(
'start' => '31369840',
'end' => '31417338',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAJC24-002'
),
'ENST00000530125' => array(
'start' => '31417012',
'end' => '31430403',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-013'
),
'ENST00000532385' => array(
'start' => '31369842',
'end' => '31408175',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-009'
),
'ENST00000536040' => array(
'start' => '31369887',
'end' => '31432832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC24-201'
),
'ENST00000303697' => array(
'start' => '30863603',
'end' => '30906705',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DCDC1-005'
),
'ENST00000342355' => array(
'start' => '30943202',
'end' => '31369810',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DCDC1-002'
),
'ENST00000406071' => array(
'start' => '30863604',
'end' => '30992686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DCDC1-201'
),
'ENST00000429306' => array(
'start' => '30906315',
'end' => '30909104',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DCDC1-006'
),
'ENST00000437348' => array(
'start' => '30931771',
'end' => '31127665',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DCDC1-011'
),
'ENST00000444572' => array(
'start' => '30830369',
'end' => '30925408',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DCDC1-008'
),
'ENST00000452803' => array(
'start' => '31262624',
'end' => '31369774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DCDC1-001'
),
'ENST00000483396' => array(
'start' => '30864942',
'end' => '30992684',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DCDC1-009'
),
'ENST00000534021' => array(
'start' => '31155903',
'end' => '31241616',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DCDC1-004'
),
'ENST00000534722' => array(
'start' => '31106894',
'end' => '31241758',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DCDC1-003'
),
'ENST00000597505' => array(
'start' => '30878584',
'end' => '31328280',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DCDC1-010'
),
'ENST00000408411' => array(
'start' => '31435470',
'end' => '31435562',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC108456.1-201'
),
'ENST00000408702' => array(
'start' => '31205759',
'end' => '31205894',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL162614.1-201'
),
'ENST00000429821' => array(
'start' => '31637328',
'end' => '31767953',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Z83001.1-002'
),
'ENST00000434742' => array(
'start' => '31727785',
'end' => '31767825',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Z83001.1-001'
),
'ENST00000454509' => array(
'start' => '31689182',
'end' => '31767825',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Z83001.1-003'
),
'ENST00000525280' => array(
'start' => '31280672',
'end' => '31280987',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CYCSP25-001'
),
'ENST00000528872' => array(
'start' => '31305685',
'end' => '31314548',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-296L11.1-001'
),
'ENST00000241001' => array(
'start' => '31789913',
'end' => '31811237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-002'
),
'ENST00000379107' => array(
'start' => '31789182',
'end' => '31810305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-011'
),
'ENST00000379109' => array(
'start' => '31789936',
'end' => '31810667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-004'
),
'ENST00000379111' => array(
'start' => '31789922',
'end' => '31811045',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-005'
),
'ENST00000379115' => array(
'start' => '31789917',
'end' => '31811331',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-001'
),
'ENST00000379123' => array(
'start' => '31789922',
'end' => '31811677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-003'
),
'ENST00000379129' => array(
'start' => '31788910',
'end' => '31817961',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-009'
),
'ENST00000379132' => array(
'start' => '31788910',
'end' => '31817961',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-008'
),
'ENST00000419022' => array(
'start' => '31784792',
'end' => '31817961',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-201'
),
'ENST00000423822' => array(
'start' => '31801869',
'end' => '31817874',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-012'
),
'ENST00000438681' => array(
'start' => '31802729',
'end' => '31811137',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-013'
),
'ENST00000455099' => array(
'start' => '31794780',
'end' => '31806921',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PAX6-016'
),
'ENST00000464174' => array(
'start' => '31789830',
'end' => '31817937',
'transcript_biotype' => 'retained_intron',
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'ENSDART00000119414' => array(
'start' => '15380274',
'end' => '15380407',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.469-201'
),
'ENSDART00000120315' => array(
'start' => '15201465',
'end' => '15201579',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.896-201'
),
'ENSDART00000002498' => array(
'start' => '16671553',
'end' => '16799176',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-201'
),
'ENSDART00000145993' => array(
'start' => '16671551',
'end' => '16761183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-001'
),
'ENSDART00000114062' => array(
'start' => '16799293',
'end' => '16830013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'immp1l-201'
),
'ENSDART00000076318' => array(
'start' => '16970942',
'end' => '16980218',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr06-201'
),
'ENSDART00000138523' => array(
'start' => '16950705',
'end' => '16960473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr04-001'
),
'ENSDART00000076300' => array(
'start' => '16963727',
'end' => '16970800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr05-201'
),
'ENSDART00000119680' => array(
'start' => '16879629',
'end' => '16879757',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.593-201'
),
'ENSDART00000120039' => array(
'start' => '16969324',
'end' => '16969442',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.759-201'
),
'ENSDART00000142619' => array(
'start' => '16997382',
'end' => '17000277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr07-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000170959' => array(
[maximum depth reached]
),
'ENSG00000221338' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
),
'ENSG00000255370' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Lung',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Adrenal',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Adipose',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Heart',
(int) 90 => 'Ovary',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Bladder',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Brain',
(int) 102 => 'Ovary',
(int) 103 => 'Kidney',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Brain',
(int) 111 => 'Heart',
(int) 112 => 'Liver',
(int) 113 => 'Muscle',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Heart',
(int) 127 => 'Lung',
(int) 128 => 'Testis'
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Kidney',
(int) 9 => 'Ovary',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adrenal',
(int) 32 => 'Breast',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Heart',
(int) 52 => 'Lung',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Placenta',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Brain',
(int) 99 => 'Heart',
(int) 100 => 'Liver',
(int) 101 => 'Muscle',
(int) 102 => 'Testis',
(int) 103 => 'Adrenal',
(int) 104 => 'Bladder',
(int) 105 => 'Brain',
(int) 106 => 'Breast',
(int) 107 => 'Colon',
(int) 108 => 'Heart',
(int) 109 => 'Liver',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000227160' => array(
[maximum depth reached]
),
'ENSG00000254584' => array(
[maximum depth reached]
),
'ENSG00000254627' => array(
[maximum depth reached]
),
'ENSG00000254836' => array(
[maximum depth reached]
),
'ENSG00000255375' => array(
[maximum depth reached]
),
'ENSG00000255490' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Ovary',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Testis',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Testis',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Testis'
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005973' => array(
[maximum depth reached]
),
'ENSMUSG00000027166' => array(
[maximum depth reached]
),
'ENSMUSG00000027167' => array(
[maximum depth reached]
),
'ENSMUSG00000042670' => array(
[maximum depth reached]
),
'ENSMUSG00000055312' => array(
[maximum depth reached]
),
'ENSMUSG00000074981' => array(
[maximum depth reached]
),
'ENSMUSG00000080859' => array(
[maximum depth reached]
),
'ENSMUSG00000081258' => array(
[maximum depth reached]
),
'ENSMUSG00000084870' => array(
[maximum depth reached]
),
'ENSMUSG00000086029' => array(
[maximum depth reached]
),
'ENSMUSG00000086764' => array(
[maximum depth reached]
),
'ENSMUSG00000087225' => array(
[maximum depth reached]
),
'ENSMUSG00000087226' => array(
[maximum depth reached]
),
'ENSMUSG00000093363' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Heart',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Bladder',
(int) 60 => 'Breast',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Bladder',
(int) 87 => 'Heart',
(int) 88 => 'Liver',
(int) 89 => 'Testis',
(int) 90 => 'Brain',
(int) 91 => 'Colon',
(int) 92 => 'Placenta',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Brain',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Placenta',
(int) 99 => 'Colon',
(int) 100 => 'Colon',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Brain',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Heart',
(int) 107 => 'Bladder',
(int) 108 => 'Breast',
(int) 109 => 'Liver',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Colon',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Bladder',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Colon',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Colon',
(int) 133 => 'Adipose',
(int) 134 => 'Adrenal',
(int) 135 => 'Bladder',
(int) 136 => 'Brain',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Heart',
(int) 140 => 'Kidney',
(int) 141 => 'Liver',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Adrenal',
(int) 149 => 'Bladder',
(int) 150 => 'Brain',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Kidney',
(int) 155 => 'Liver',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Brain',
(int) 162 => 'Breast',
(int) 163 => 'Colon',
(int) 164 => 'Heart',
(int) 165 => 'Kidney',
(int) 166 => 'Liver',
(int) 167 => 'Lung',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Brain',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Ovary',
(int) 174 => 'Ovary',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Brain',
(int) 178 => 'Bladder',
(int) 179 => 'Brain',
(int) 180 => 'Breast',
(int) 181 => 'Liver',
(int) 182 => 'Muscle',
(int) 183 => 'Ovary',
(int) 184 => 'Placenta',
(int) 185 => 'Testis',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Placenta',
(int) 189 => 'Testis',
(int) 190 => 'Brain',
(int) 191 => 'Colon',
(int) 192 => 'Liver',
(int) 193 => 'Testis',
(int) 194 => 'Brain',
(int) 195 => 'Testis',
(int) 196 => 'Brain',
(int) 197 => 'Liver',
(int) 198 => 'Lung',
(int) 199 => 'Ovary',
(int) 200 => 'Placenta',
(int) 201 => 'Testis',
(int) 202 => 'Brain',
(int) 203 => 'Heart',
(int) 204 => 'Lung',
(int) 205 => 'Muscle',
(int) 206 => 'Ovary',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Kidney',
(int) 213 => 'Liver',
(int) 214 => 'Lung',
(int) 215 => 'Ovary',
(int) 216 => 'Placenta',
(int) 217 => 'Testis'
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000023927' => array(
[maximum depth reached]
),
'ENSDARG00000045045' => array(
[maximum depth reached]
),
'ENSDARG00000084915' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Muscle',
(int) 10 => 'Brain'
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
'ENSDARG00000008852' => array(
[maximum depth reached]
),
'ENSDARG00000045935' => array(
[maximum depth reached]
),
'ENSDARG00000054184' => array(
[maximum depth reached]
),
'ENSDARG00000060962' => array(
[maximum depth reached]
),
'ENSDARG00000074813' => array(
[maximum depth reached]
),
'ENSDARG00000094877' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Brain',
(int) 24 => 'Kidney',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000109911' => 'elongator acetyltransferase complex subunit 4',
'ENSG00000148950' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSG00000170946' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSG00000170959' => 'doublecortin domain containing 1',
'ENSG00000221338' => null,
'ENSG00000221629' => null,
'ENSG00000228061' => null,
'ENSG00000255370' => 'cytochrome c, somatic pseudogene 25',
'ENSG00000255525' => null,
'ENSG00000007372' => 'paired box 6',
'ENSG00000049449' => 'reticulocalbin 1, EF-hand calcium binding domain',
'ENSG00000212551' => 'Small nucleolar RNA U3',
'ENSG00000227160' => 'thioesterase superfamily member 7, pseudogene',
'ENSG00000254584' => null,
'ENSG00000254627' => null,
'ENSG00000254836' => null,
'ENSG00000255252' => null,
'ENSG00000255375' => null,
'ENSG00000255490' => 'eukaryotic translation initiation factor 4A2 pseudogene 5',
'ENSMUSG00000005973' => 'reticulocalbin 1',
'ENSMUSG00000027166' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSMUSG00000027167' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSMUSG00000027168' => 'paired box 6',
'ENSMUSG00000042670' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSMUSG00000055312' => 'thioesterase superfamily member 7',
'ENSMUSG00000074981' => 'doublecortin domain containing 5',
'ENSMUSG00000080859' => 'ribosomal protein L10, pseudogene 1',
'ENSMUSG00000081258' => 'predicted gene 14013',
'ENSMUSG00000081701' => 'predicted gene 13890',
'ENSMUSG00000083425' => 'predicted gene 13992',
'ENSMUSG00000084571' => 'nuclear encoded rRNA 5S 201',
'ENSMUSG00000084870' => 'predicted gene 13954',
'ENSMUSG00000086029' => 'paired box 6 opposite strand 1',
'ENSMUSG00000086764' => 'RIKEN cDNA 4930527A07 gene',
'ENSMUSG00000087225' => 'predicted gene 14014',
'ENSMUSG00000087226' => 'predicted gene 14015',
'ENSMUSG00000093363' => 'predicted gene, 22002',
'ENSMUSG00000100156' => 'predicted gene 29053',
'ENSDARG00000023927' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSDARG00000045045' => 'paired box gene 6a',
'ENSDARG00000084014' => '5S ribosomal RNA',
'ENSDARG00000084915' => '5S ribosomal RNA',
'ENSDARG00000008852' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSDARG00000045935' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSDARG00000054184' => 'bloodthirsty-related gene family, member 6',
'ENSDARG00000060962' => 'bloodthirsty-related gene family, member 4',
'ENSDARG00000074813' => 'bloodthirsty-related gene family, member 5',
'ENSDARG00000084280' => '5S ribosomal RNA',
'ENSDARG00000084639' => '5S ribosomal RNA',
'ENSDARG00000094877' => 'bloodthirsty-related gene family, member 7'
)
$gene_name_arr = array(
'ENSG00000109911' => 'ELP4',
'ENSG00000148950' => 'IMMP1L',
'ENSG00000170946' => 'DNAJC24',
'ENSG00000170959' => 'DCDC1',
'ENSG00000221338' => 'AC108456.1',
'ENSG00000221629' => 'AL162614.1',
'ENSG00000228061' => 'Z83001.1',
'ENSG00000255370' => 'CYCSP25',
'ENSG00000255525' => 'RP1-296L11.1',
'ENSG00000007372' => 'PAX6',
'ENSG00000049449' => 'RCN1',
'ENSG00000212551' => 'U3',
'ENSG00000227160' => 'THEM7P',
'ENSG00000254584' => 'RP1-17K7.2',
'ENSG00000254627' => 'RP1-17K7.1',
'ENSG00000254836' => 'RP1-17K7.3',
'ENSG00000255252' => 'RP1-65P5.3',
'ENSG00000255375' => 'RP1-65P5.5',
'ENSG00000255490' => 'EIF4A2P5',
'ENSMUSG00000005973' => 'Rcn1',
'ENSMUSG00000027166' => 'Dnajc24',
'ENSMUSG00000027167' => 'Elp4',
'ENSMUSG00000027168' => 'Pax6',
'ENSMUSG00000042670' => 'Immp1l',
'ENSMUSG00000055312' => 'Them7',
'ENSMUSG00000074981' => 'Dcdc5',
'ENSMUSG00000080859' => 'Rpl10-ps1',
'ENSMUSG00000081258' => 'Gm14013',
'ENSMUSG00000081701' => 'Gm13890',
'ENSMUSG00000083425' => 'Gm13992',
'ENSMUSG00000084571' => 'n-R5s201',
'ENSMUSG00000084870' => 'Gm13954',
'ENSMUSG00000086029' => 'Pax6os1',
'ENSMUSG00000086764' => '4930527A07Rik',
'ENSMUSG00000087225' => 'Gm14014',
'ENSMUSG00000087226' => 'Gm14015',
'ENSMUSG00000093363' => 'Gm22002',
'ENSMUSG00000100156' => 'RP23-245K23.3',
'ENSDARG00000023927' => 'dnajc24',
'ENSDARG00000045045' => 'pax6a',
'ENSDARG00000084014' => '5S_rRNA',
'ENSDARG00000084915' => '5S_rRNA',
'ENSDARG00000008852' => 'elp4',
'ENSDARG00000045935' => 'immp1l',
'ENSDARG00000054184' => 'btr06',
'ENSDARG00000060962' => 'btr04',
'ENSDARG00000074813' => 'btr05',
'ENSDARG00000084280' => '5S_rRNA',
'ENSDARG00000084639' => '5S_rRNA',
'ENSDARG00000094877' => 'btr07'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0001',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '30717111',
'seq_end' => '31639896',
'region_length' => '922785',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0002',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31639896',
'seq_end' => '31819124',
'region_length' => '179228',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0003',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31819125',
'seq_end' => '31842092',
'region_length' => '22967',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0004',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31842093',
'seq_end' => '32226008',
'region_length' => '383915',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0005',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '105301487',
'seq_end' => '106575818',
'region_length' => '1274331',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0006',
'tax_id' => '7955',
'chromosome' => '25',
'seq_start' => '15074419',
'seq_end' => '15472105',
'region_length' => '397686',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0007',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '16664841',
'seq_end' => '17056005',
'region_length' => '391164',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 71 => 'Brain',
(int) 136 => 'Breast',
(int) 172 => 'Colon',
(int) 211 => 'Heart',
(int) 257 => 'Kidney',
(int) 301 => 'Liver',
(int) 350 => 'Lung',
(int) 389 => 'Muscle',
(int) 429 => 'Ovary',
(int) 475 => 'Placenta',
(int) 515 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 203
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000350638' => array(
'start' => '31509750',
'end' => '31783998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-001'
),
'ENST00000379163' => array(
'start' => '31509770',
'end' => '31783771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-004'
),
'ENST00000395934' => array(
'start' => '31509778',
'end' => '31783775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-003'
),
'ENST00000474374' => array(
'start' => '31509771',
'end' => '31650221',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ELP4-002'
),
'ENST00000278200' => array(
'start' => '31432402',
'end' => '31509622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-001'
),
'ENST00000526776' => array(
'start' => '31432401',
'end' => '31509574',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-012'
),
'ENST00000527184' => array(
'start' => '31449030',
'end' => '31509592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-013'
),
'ENST00000528161' => array(
'start' => '31452198',
'end' => '31509563',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-004'
),
'ENST00000529749' => array(
'start' => '31456260',
'end' => '31509603',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-011'
),
'ENST00000530023' => array(
'start' => '31456293',
'end' => '31509632',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-006'
),
'ENST00000531331' => array(
'start' => '31432401',
'end' => '31456338',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'IMMP1L-014'
),
'ENST00000531693' => array(
'start' => '31456313',
'end' => '31509578',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-008'
),
'ENST00000532287' => array(
'start' => '31432401',
'end' => '31509574',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-002'
),
'ENST00000532624' => array(
'start' => '31452545',
'end' => '31509605',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-003'
),
'ENST00000532668' => array(
'start' => '31477115',
'end' => '31509608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IMMP1L-010'
),
'ENST00000533512' => array(
'start' => '31432402',
'end' => '31433755',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IMMP1L-015'
),
'ENST00000533642' => array(
'start' => '31432493',
'end' => '31509645',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-005'
),
'ENST00000533921' => array(
'start' => '31488197',
'end' => '31509595',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-007'
),
'ENST00000534812' => array(
'start' => '31432401',
'end' => '31509592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-009'
),
'ENST00000395949' => array(
'start' => '31426287',
'end' => '31430703',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-011'
),
'ENST00000465995' => array(
'start' => '31369840',
'end' => '31431849',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC24-001'
),
'ENST00000524747' => array(
'start' => '31422065',
'end' => '31429866',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-012'
),
'ENST00000525511' => array(
'start' => '31369848',
'end' => '31414906',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-006'
),
'ENST00000526042' => array(
'start' => '31369857',
'end' => '31427978',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-003'
),
'ENST00000526529' => array(
'start' => '31369864',
'end' => '31408319',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-008'
),
'ENST00000527601' => array(
'start' => '31369840',
'end' => '31385100',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-007'
),
'ENST00000527731' => array(
'start' => '31370807',
'end' => '31426385',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-010'
),
'ENST00000529086' => array(
'start' => '31369840',
'end' => '31417338',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAJC24-002'
),
'ENST00000530125' => array(
'start' => '31417012',
'end' => '31430403',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-013'
),
'ENST00000532385' => array(
'start' => '31369842',
'end' => '31408175',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC24-009'
),
'ENST00000536040' => array(
'start' => '31369887',
'end' => '31432832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC24-201'
),
'ENST00000303697' => array(
'start' => '30863603',
'end' => '30906705',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DCDC1-005'
),
'ENST00000342355' => array(
'start' => '30943202',
'end' => '31369810',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DCDC1-002'
),
'ENST00000406071' => array(
'start' => '30863604',
'end' => '30992686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DCDC1-201'
),
'ENST00000429306' => array(
'start' => '30906315',
'end' => '30909104',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DCDC1-006'
),
'ENST00000437348' => array(
'start' => '30931771',
'end' => '31127665',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DCDC1-011'
),
'ENST00000444572' => array(
'start' => '30830369',
'end' => '30925408',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DCDC1-008'
),
'ENST00000452803' => array(
'start' => '31262624',
'end' => '31369774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DCDC1-001'
),
'ENST00000483396' => array(
'start' => '30864942',
'end' => '30992684',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DCDC1-009'
),
'ENST00000534021' => array(
'start' => '31155903',
'end' => '31241616',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DCDC1-004'
),
'ENST00000534722' => array(
'start' => '31106894',
'end' => '31241758',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DCDC1-003'
),
'ENST00000597505' => array(
'start' => '30878584',
'end' => '31328280',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DCDC1-010'
),
'ENST00000408411' => array(
'start' => '31435470',
'end' => '31435562',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC108456.1-201'
),
'ENST00000408702' => array(
'start' => '31205759',
'end' => '31205894',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL162614.1-201'
),
'ENST00000429821' => array(
'start' => '31637328',
'end' => '31767953',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Z83001.1-002'
),
'ENST00000434742' => array(
'start' => '31727785',
'end' => '31767825',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Z83001.1-001'
),
'ENST00000454509' => array(
'start' => '31689182',
'end' => '31767825',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Z83001.1-003'
),
'ENST00000525280' => array(
'start' => '31280672',
'end' => '31280987',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CYCSP25-001'
),
'ENST00000528872' => array(
'start' => '31305685',
'end' => '31314548',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-296L11.1-001'
),
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'transcript_name' => 'pax6a-002'
),
'ENSDART00000124577' => array(
'start' => '15289722',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-202'
),
'ENSDART00000128877' => array(
'start' => '15289722',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-203'
),
'ENSDART00000129319' => array(
'start' => '15290670',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-204'
),
'ENSDART00000131523' => array(
'start' => '15290408',
'end' => '15306040',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-005'
),
'ENSDART00000132425' => array(
'start' => '15295204',
'end' => '15306015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-006'
),
'ENSDART00000133390' => array(
'start' => '15294637',
'end' => '15301046',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-009'
),
'ENSDART00000133941' => array(
'start' => '15299740',
'end' => '15310426',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-003'
),
'ENSDART00000139544' => array(
'start' => '15294633',
'end' => '15301119',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-008'
),
'ENSDART00000144597' => array(
'start' => '15299602',
'end' => '15306117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-007'
),
'ENSDART00000148420' => array(
'start' => '15289718',
'end' => '15310396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-001'
),
'ENSDART00000148771' => array(
'start' => '15300171',
'end' => '15301036',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'pax6a-010'
),
'ENSDART00000149131' => array(
'start' => '15300376',
'end' => '15310458',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-004'
),
'ENSDART00000119414' => array(
'start' => '15380274',
'end' => '15380407',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.469-201'
),
'ENSDART00000120315' => array(
'start' => '15201465',
'end' => '15201579',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.896-201'
),
'ENSDART00000002498' => array(
'start' => '16671553',
'end' => '16799176',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-201'
),
'ENSDART00000145993' => array(
'start' => '16671551',
'end' => '16761183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-001'
),
'ENSDART00000114062' => array(
'start' => '16799293',
'end' => '16830013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'immp1l-201'
),
'ENSDART00000076318' => array(
'start' => '16970942',
'end' => '16980218',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr06-201'
),
'ENSDART00000138523' => array(
'start' => '16950705',
'end' => '16960473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr04-001'
),
'ENSDART00000076300' => array(
'start' => '16963727',
'end' => '16970800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr05-201'
),
'ENSDART00000119680' => array(
'start' => '16879629',
'end' => '16879757',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.593-201'
),
'ENSDART00000120039' => array(
'start' => '16969324',
'end' => '16969442',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.759-201'
),
'ENSDART00000142619' => array(
'start' => '16997382',
'end' => '17000277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr07-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000170959' => array(
[maximum depth reached]
),
'ENSG00000221338' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
),
'ENSG00000255370' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Lung',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Adrenal',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Adipose',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Heart',
(int) 90 => 'Ovary',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Bladder',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Brain',
(int) 102 => 'Ovary',
(int) 103 => 'Kidney',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Brain',
(int) 111 => 'Heart',
(int) 112 => 'Liver',
(int) 113 => 'Muscle',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Heart',
(int) 127 => 'Lung',
(int) 128 => 'Testis'
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Kidney',
(int) 9 => 'Ovary',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adrenal',
(int) 32 => 'Breast',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Heart',
(int) 52 => 'Lung',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Placenta',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Brain',
(int) 99 => 'Heart',
(int) 100 => 'Liver',
(int) 101 => 'Muscle',
(int) 102 => 'Testis',
(int) 103 => 'Adrenal',
(int) 104 => 'Bladder',
(int) 105 => 'Brain',
(int) 106 => 'Breast',
(int) 107 => 'Colon',
(int) 108 => 'Heart',
(int) 109 => 'Liver',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000227160' => array(
[maximum depth reached]
),
'ENSG00000254584' => array(
[maximum depth reached]
),
'ENSG00000254627' => array(
[maximum depth reached]
),
'ENSG00000254836' => array(
[maximum depth reached]
),
'ENSG00000255375' => array(
[maximum depth reached]
),
'ENSG00000255490' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Ovary',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Testis',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Testis',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Testis'
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005973' => array(
[maximum depth reached]
),
'ENSMUSG00000027166' => array(
[maximum depth reached]
),
'ENSMUSG00000027167' => array(
[maximum depth reached]
),
'ENSMUSG00000042670' => array(
[maximum depth reached]
),
'ENSMUSG00000055312' => array(
[maximum depth reached]
),
'ENSMUSG00000074981' => array(
[maximum depth reached]
),
'ENSMUSG00000080859' => array(
[maximum depth reached]
),
'ENSMUSG00000081258' => array(
[maximum depth reached]
),
'ENSMUSG00000084870' => array(
[maximum depth reached]
),
'ENSMUSG00000086029' => array(
[maximum depth reached]
),
'ENSMUSG00000086764' => array(
[maximum depth reached]
),
'ENSMUSG00000087225' => array(
[maximum depth reached]
),
'ENSMUSG00000087226' => array(
[maximum depth reached]
),
'ENSMUSG00000093363' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Heart',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Bladder',
(int) 60 => 'Breast',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Bladder',
(int) 87 => 'Heart',
(int) 88 => 'Liver',
(int) 89 => 'Testis',
(int) 90 => 'Brain',
(int) 91 => 'Colon',
(int) 92 => 'Placenta',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Brain',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Placenta',
(int) 99 => 'Colon',
(int) 100 => 'Colon',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Brain',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Heart',
(int) 107 => 'Bladder',
(int) 108 => 'Breast',
(int) 109 => 'Liver',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Colon',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Bladder',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Colon',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Colon',
(int) 133 => 'Adipose',
(int) 134 => 'Adrenal',
(int) 135 => 'Bladder',
(int) 136 => 'Brain',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Heart',
(int) 140 => 'Kidney',
(int) 141 => 'Liver',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Adrenal',
(int) 149 => 'Bladder',
(int) 150 => 'Brain',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Kidney',
(int) 155 => 'Liver',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Brain',
(int) 162 => 'Breast',
(int) 163 => 'Colon',
(int) 164 => 'Heart',
(int) 165 => 'Kidney',
(int) 166 => 'Liver',
(int) 167 => 'Lung',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Brain',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Ovary',
(int) 174 => 'Ovary',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Brain',
(int) 178 => 'Bladder',
(int) 179 => 'Brain',
(int) 180 => 'Breast',
(int) 181 => 'Liver',
(int) 182 => 'Muscle',
(int) 183 => 'Ovary',
(int) 184 => 'Placenta',
(int) 185 => 'Testis',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Placenta',
(int) 189 => 'Testis',
(int) 190 => 'Brain',
(int) 191 => 'Colon',
(int) 192 => 'Liver',
(int) 193 => 'Testis',
(int) 194 => 'Brain',
(int) 195 => 'Testis',
(int) 196 => 'Brain',
(int) 197 => 'Liver',
(int) 198 => 'Lung',
(int) 199 => 'Ovary',
(int) 200 => 'Placenta',
(int) 201 => 'Testis',
(int) 202 => 'Brain',
(int) 203 => 'Heart',
(int) 204 => 'Lung',
(int) 205 => 'Muscle',
(int) 206 => 'Ovary',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Kidney',
(int) 213 => 'Liver',
(int) 214 => 'Lung',
(int) 215 => 'Ovary',
(int) 216 => 'Placenta',
(int) 217 => 'Testis'
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000023927' => array(
[maximum depth reached]
),
'ENSDARG00000045045' => array(
[maximum depth reached]
),
'ENSDARG00000084915' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Muscle',
(int) 10 => 'Brain'
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
'ENSDARG00000008852' => array(
[maximum depth reached]
),
'ENSDARG00000045935' => array(
[maximum depth reached]
),
'ENSDARG00000054184' => array(
[maximum depth reached]
),
'ENSDARG00000060962' => array(
[maximum depth reached]
),
'ENSDARG00000074813' => array(
[maximum depth reached]
),
'ENSDARG00000094877' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Brain',
(int) 24 => 'Kidney',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0003',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31819125',
'seq_end' => '31842092',
'region_length' => '22967',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
)
$gene_el = array(
'ENST00000429821' => array(
'Brain' => array(
'average_FPKM' => '0.238',
'stddev_FPKM' => '0.05'
),
'Breast' => array(
'average_FPKM' => '3.039',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.492',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.141',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.594',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.225',
'stddev_FPKM' => '0.00'
)
),
'ENST00000434742' => array(
'Brain' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.121',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.358',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
),
'ENST00000454509' => array(
'Adrenal' => array(
'average_FPKM' => '0.215',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.100',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.12'
),
'Breast' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.097',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.040',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.555',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.345',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.081',
'stddev_FPKM' => '0.02'
)
)
)
$gene_key = 'ENSG00000228061'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.215',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.100',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.12'
),
'Breast' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.097',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.040',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.555',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.345',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.081',
'stddev_FPKM' => '0.02'
)
)
$tran_key = 'ENST00000454509'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000109911' => 'elongator acetyltransferase complex subunit 4',
'ENSG00000148950' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSG00000170946' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSG00000170959' => 'doublecortin domain containing 1',
'ENSG00000221338' => null,
'ENSG00000221629' => null,
'ENSG00000228061' => null,
'ENSG00000255370' => 'cytochrome c, somatic pseudogene 25',
'ENSG00000255525' => null,
'ENSG00000007372' => 'paired box 6',
'ENSG00000049449' => 'reticulocalbin 1, EF-hand calcium binding domain',
'ENSG00000212551' => 'Small nucleolar RNA U3',
'ENSG00000227160' => 'thioesterase superfamily member 7, pseudogene',
'ENSG00000254584' => null,
'ENSG00000254627' => null,
'ENSG00000254836' => null,
'ENSG00000255252' => null,
'ENSG00000255375' => null,
'ENSG00000255490' => 'eukaryotic translation initiation factor 4A2 pseudogene 5',
'ENSMUSG00000005973' => 'reticulocalbin 1',
'ENSMUSG00000027166' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSMUSG00000027167' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSMUSG00000027168' => 'paired box 6',
'ENSMUSG00000042670' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSMUSG00000055312' => 'thioesterase superfamily member 7',
'ENSMUSG00000074981' => 'doublecortin domain containing 5',
'ENSMUSG00000080859' => 'ribosomal protein L10, pseudogene 1',
'ENSMUSG00000081258' => 'predicted gene 14013',
'ENSMUSG00000081701' => 'predicted gene 13890',
'ENSMUSG00000083425' => 'predicted gene 13992',
'ENSMUSG00000084571' => 'nuclear encoded rRNA 5S 201',
'ENSMUSG00000084870' => 'predicted gene 13954',
'ENSMUSG00000086029' => 'paired box 6 opposite strand 1',
'ENSMUSG00000086764' => 'RIKEN cDNA 4930527A07 gene',
'ENSMUSG00000087225' => 'predicted gene 14014',
'ENSMUSG00000087226' => 'predicted gene 14015',
'ENSMUSG00000093363' => 'predicted gene, 22002',
'ENSMUSG00000100156' => 'predicted gene 29053',
'ENSDARG00000023927' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSDARG00000045045' => 'paired box gene 6a',
'ENSDARG00000084014' => '5S ribosomal RNA',
'ENSDARG00000084915' => '5S ribosomal RNA',
'ENSDARG00000008852' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSDARG00000045935' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSDARG00000054184' => 'bloodthirsty-related gene family, member 6',
'ENSDARG00000060962' => 'bloodthirsty-related gene family, member 4',
'ENSDARG00000074813' => 'bloodthirsty-related gene family, member 5',
'ENSDARG00000084280' => '5S ribosomal RNA',
'ENSDARG00000084639' => '5S ribosomal RNA',
'ENSDARG00000094877' => 'bloodthirsty-related gene family, member 7'
),
'gene_name_arr' => array(
'ENSG00000109911' => 'ELP4',
'ENSG00000148950' => 'IMMP1L',
'ENSG00000170946' => 'DNAJC24',
'ENSG00000170959' => 'DCDC1',
'ENSG00000221338' => 'AC108456.1',
'ENSG00000221629' => 'AL162614.1',
'ENSG00000228061' => 'Z83001.1',
'ENSG00000255370' => 'CYCSP25',
'ENSG00000255525' => 'RP1-296L11.1',
'ENSG00000007372' => 'PAX6',
'ENSG00000049449' => 'RCN1',
'ENSG00000212551' => 'U3',
'ENSG00000227160' => 'THEM7P',
'ENSG00000254584' => 'RP1-17K7.2',
'ENSG00000254627' => 'RP1-17K7.1',
'ENSG00000254836' => 'RP1-17K7.3',
'ENSG00000255252' => 'RP1-65P5.3',
'ENSG00000255375' => 'RP1-65P5.5',
'ENSG00000255490' => 'EIF4A2P5',
'ENSMUSG00000005973' => 'Rcn1',
'ENSMUSG00000027166' => 'Dnajc24',
'ENSMUSG00000027167' => 'Elp4',
'ENSMUSG00000027168' => 'Pax6',
'ENSMUSG00000042670' => 'Immp1l',
'ENSMUSG00000055312' => 'Them7',
'ENSMUSG00000074981' => 'Dcdc5',
'ENSMUSG00000080859' => 'Rpl10-ps1',
'ENSMUSG00000081258' => 'Gm14013',
'ENSMUSG00000081701' => 'Gm13890',
'ENSMUSG00000083425' => 'Gm13992',
'ENSMUSG00000084571' => 'n-R5s201',
'ENSMUSG00000084870' => 'Gm13954',
'ENSMUSG00000086029' => 'Pax6os1',
'ENSMUSG00000086764' => '4930527A07Rik',
'ENSMUSG00000087225' => 'Gm14014',
'ENSMUSG00000087226' => 'Gm14015',
'ENSMUSG00000093363' => 'Gm22002',
'ENSMUSG00000100156' => 'RP23-245K23.3',
'ENSDARG00000023927' => 'dnajc24',
'ENSDARG00000045045' => 'pax6a',
'ENSDARG00000084014' => '5S_rRNA',
'ENSDARG00000084915' => '5S_rRNA',
'ENSDARG00000008852' => 'elp4',
'ENSDARG00000045935' => 'immp1l',
'ENSDARG00000054184' => 'btr06',
'ENSDARG00000060962' => 'btr04',
'ENSDARG00000074813' => 'btr05',
'ENSDARG00000084280' => '5S_rRNA',
'ENSDARG00000084639' => '5S_rRNA',
'ENSDARG00000094877' => 'btr07'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 71 => 'Brain',
(int) 136 => 'Breast',
(int) 172 => 'Colon',
(int) 211 => 'Heart',
(int) 257 => 'Kidney',
(int) 301 => 'Liver',
(int) 350 => 'Lung',
(int) 389 => 'Muscle',
(int) 429 => 'Ovary',
(int) 475 => 'Placenta',
(int) 515 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 203,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000350638' => array(
'start' => '31509750',
'end' => '31783998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-001'
),
'ENST00000379163' => array(
'start' => '31509770',
'end' => '31783771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-004'
),
'ENST00000395934' => array(
'start' => '31509778',
'end' => '31783775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-003'
),
'ENST00000474374' => array(
'start' => '31509771',
'end' => '31650221',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ELP4-002'
),
'ENST00000278200' => array(
'start' => '31432402',
'end' => '31509622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-001'
),
'ENST00000526776' => array(
'start' => '31432401',
'end' => '31509574',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-012'
),
'ENST00000527184' => array(
'start' => '31449030',
'end' => '31509592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-013'
),
'ENST00000528161' => array(
'start' => '31452198',
'end' => '31509563',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-004'
),
'ENST00000529749' => array(
'start' => '31456260',
'end' => '31509603',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-011'
),
'ENST00000530023' => array(
'start' => '31456293',
'end' => '31509632',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-006'
),
'ENST00000531331' => array(
'start' => '31432401',
'end' => '31456338',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'IMMP1L-014'
),
'ENST00000531693' => array(
'start' => '31456313',
'end' => '31509578',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-008'
),
'ENST00000532287' => array(
'start' => '31432401',
'end' => '31509574',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-002'
),
'ENST00000532624' => array(
'start' => '31452545',
'end' => '31509605',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-003'
),
'ENST00000532668' => array(
'start' => '31477115',
'end' => '31509608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IMMP1L-010'
),
'ENST00000533512' => array(
'start' => '31432402',
'end' => '31433755',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IMMP1L-015'
),
'ENST00000533642' => array(
'start' => '31432493',
'end' => '31509645',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-005'
),
'ENST00000533921' => array(
'start' => '31488197',
'end' => '31509595',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-007'
),
'ENST00000534812' => array(
'start' => '31432401',
'end' => '31509592',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-009'
),
'ENST00000395949' => array(
'start' => '31426287',
'end' => '31430703',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC24-011'
),
'ENST00000465995' => array(
'start' => '31369840',
'end' => '31431849',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC24-001'
),
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'transcript_name' => 'Pax6-023'
),
'ENSMUST00000156216' => array(
'start' => '105678391',
'end' => '105685795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pax6-017'
),
'ENSMUST00000167211' => array(
'start' => '105675513',
'end' => '105697361',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pax6-201'
),
'ENSMUST00000172990' => array(
'start' => '105675109',
'end' => '105675972',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-010'
),
'ENSMUST00000037499' => array(
'start' => '105904638',
'end' => '105965558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Immp1l-001'
),
'ENSMUST00000068813' => array(
'start' => '105224320',
'end' => '105379796',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Them7-001'
),
'ENSMUST00000131060' => array(
'start' => '105224342',
'end' => '105379035',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Them7-002'
),
'ENSMUST00000037284' => array(
'start' => '106383687',
'end' => '106406151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dcdc5-004'
),
'ENSMUST00000122388' => array(
'start' => '106038218',
'end' => '106385623',
'transcript_biotype' => 'unitary_pseudogene',
'transcript_name' => 'Dcdc5-001'
),
'ENSMUST00000126340' => array(
'start' => '106003336',
'end' => '106040626',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dcdc5-002'
),
'ENSMUST00000148101' => array(
'start' => '106226454',
'end' => '106336141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dcdc5-005'
),
'ENSMUST00000152776' => array(
'start' => '106222057',
'end' => '106385623',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dcdc5-003'
),
'ENSMUST00000119438' => array(
'start' => '105554201',
'end' => '105554845',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'Rpl10-ps1-001'
),
'ENSMUST00000119006' => array(
'start' => '106265307',
'end' => '106265576',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14013-001'
),
'ENSMUST00000117578' => array(
'start' => '105537093',
'end' => '105537482',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'Gm13890-001'
),
'ENSMUST00000120558' => array(
'start' => '106015200',
'end' => '106015355',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13992-001'
),
'ENSMUST00000122622' => array(
'start' => '105997032',
'end' => '105997147',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s201-201'
),
'ENSMUST00000123441' => array(
'start' => '105708999',
'end' => '105710098',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm13954-001'
),
'ENSMUST00000126948' => array(
'start' => '105536939',
'end' => '105670280',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Pax6os1-002'
),
'ENSMUST00000149133' => array(
'start' => '105536080',
'end' => '105670330',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Pax6os1-001'
),
'ENSMUST00000130677' => array(
'start' => '105476501',
'end' => '105477357',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930527A07Rik-001'
),
'ENSMUST00000156718' => array(
'start' => '106574791',
'end' => '106580840',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14014-001'
),
'ENSMUST00000130634' => array(
'start' => '106463823',
'end' => '106523103',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14015-001'
),
'ENSMUST00000175622' => array(
'start' => '105992757',
'end' => '105992881',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm22002-201'
),
'ENSMUST00000187484' => array(
'start' => '106038463',
'end' => '106040496',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-245K23.3-001'
),
'ENSDART00000035714' => array(
'start' => '15130720',
'end' => '15159786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnajc24-001'
),
'ENSDART00000066224' => array(
'start' => '15289722',
'end' => '15409410',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-201'
),
'ENSDART00000066225' => array(
'start' => '15289718',
'end' => '15310371',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-002'
),
'ENSDART00000124577' => array(
'start' => '15289722',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-202'
),
'ENSDART00000128877' => array(
'start' => '15289722',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-203'
),
'ENSDART00000129319' => array(
'start' => '15290670',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-204'
),
'ENSDART00000131523' => array(
'start' => '15290408',
'end' => '15306040',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-005'
),
'ENSDART00000132425' => array(
'start' => '15295204',
'end' => '15306015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-006'
),
'ENSDART00000133390' => array(
'start' => '15294637',
'end' => '15301046',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-009'
),
'ENSDART00000133941' => array(
'start' => '15299740',
'end' => '15310426',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-003'
),
'ENSDART00000139544' => array(
'start' => '15294633',
'end' => '15301119',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-008'
),
'ENSDART00000144597' => array(
'start' => '15299602',
'end' => '15306117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-007'
),
'ENSDART00000148420' => array(
'start' => '15289718',
'end' => '15310396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-001'
),
'ENSDART00000148771' => array(
'start' => '15300171',
'end' => '15301036',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'pax6a-010'
),
'ENSDART00000149131' => array(
'start' => '15300376',
'end' => '15310458',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-004'
),
'ENSDART00000119414' => array(
'start' => '15380274',
'end' => '15380407',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.469-201'
),
'ENSDART00000120315' => array(
'start' => '15201465',
'end' => '15201579',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.896-201'
),
'ENSDART00000002498' => array(
'start' => '16671553',
'end' => '16799176',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-201'
),
'ENSDART00000145993' => array(
'start' => '16671551',
'end' => '16761183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-001'
),
'ENSDART00000114062' => array(
'start' => '16799293',
'end' => '16830013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'immp1l-201'
),
'ENSDART00000076318' => array(
'start' => '16970942',
'end' => '16980218',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr06-201'
),
'ENSDART00000138523' => array(
'start' => '16950705',
'end' => '16960473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr04-001'
),
'ENSDART00000076300' => array(
'start' => '16963727',
'end' => '16970800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr05-201'
),
'ENSDART00000119680' => array(
'start' => '16879629',
'end' => '16879757',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.593-201'
),
'ENSDART00000120039' => array(
'start' => '16969324',
'end' => '16969442',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.759-201'
),
'ENSDART00000142619' => array(
'start' => '16997382',
'end' => '17000277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr07-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000170959' => array(
[maximum depth reached]
),
'ENSG00000221338' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
),
'ENSG00000255370' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Lung',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Adrenal',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Adipose',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Heart',
(int) 90 => 'Ovary',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Bladder',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Brain',
(int) 102 => 'Ovary',
(int) 103 => 'Kidney',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Brain',
(int) 111 => 'Heart',
(int) 112 => 'Liver',
(int) 113 => 'Muscle',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Heart',
(int) 127 => 'Lung',
(int) 128 => 'Testis'
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Kidney',
(int) 9 => 'Ovary',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adrenal',
(int) 32 => 'Breast',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Heart',
(int) 52 => 'Lung',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Placenta',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Brain',
(int) 99 => 'Heart',
(int) 100 => 'Liver',
(int) 101 => 'Muscle',
(int) 102 => 'Testis',
(int) 103 => 'Adrenal',
(int) 104 => 'Bladder',
(int) 105 => 'Brain',
(int) 106 => 'Breast',
(int) 107 => 'Colon',
(int) 108 => 'Heart',
(int) 109 => 'Liver',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000227160' => array(
[maximum depth reached]
),
'ENSG00000254584' => array(
[maximum depth reached]
),
'ENSG00000254627' => array(
[maximum depth reached]
),
'ENSG00000254836' => array(
[maximum depth reached]
),
'ENSG00000255375' => array(
[maximum depth reached]
),
'ENSG00000255490' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Ovary',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Testis',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Testis',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Testis'
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005973' => array(
[maximum depth reached]
),
'ENSMUSG00000027166' => array(
[maximum depth reached]
),
'ENSMUSG00000027167' => array(
[maximum depth reached]
),
'ENSMUSG00000042670' => array(
[maximum depth reached]
),
'ENSMUSG00000055312' => array(
[maximum depth reached]
),
'ENSMUSG00000074981' => array(
[maximum depth reached]
),
'ENSMUSG00000080859' => array(
[maximum depth reached]
),
'ENSMUSG00000081258' => array(
[maximum depth reached]
),
'ENSMUSG00000084870' => array(
[maximum depth reached]
),
'ENSMUSG00000086029' => array(
[maximum depth reached]
),
'ENSMUSG00000086764' => array(
[maximum depth reached]
),
'ENSMUSG00000087225' => array(
[maximum depth reached]
),
'ENSMUSG00000087226' => array(
[maximum depth reached]
),
'ENSMUSG00000093363' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Heart',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Bladder',
(int) 60 => 'Breast',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Bladder',
(int) 87 => 'Heart',
(int) 88 => 'Liver',
(int) 89 => 'Testis',
(int) 90 => 'Brain',
(int) 91 => 'Colon',
(int) 92 => 'Placenta',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Brain',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Placenta',
(int) 99 => 'Colon',
(int) 100 => 'Colon',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Brain',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Heart',
(int) 107 => 'Bladder',
(int) 108 => 'Breast',
(int) 109 => 'Liver',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Colon',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Bladder',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Colon',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Colon',
(int) 133 => 'Adipose',
(int) 134 => 'Adrenal',
(int) 135 => 'Bladder',
(int) 136 => 'Brain',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Heart',
(int) 140 => 'Kidney',
(int) 141 => 'Liver',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Adrenal',
(int) 149 => 'Bladder',
(int) 150 => 'Brain',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Kidney',
(int) 155 => 'Liver',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Brain',
(int) 162 => 'Breast',
(int) 163 => 'Colon',
(int) 164 => 'Heart',
(int) 165 => 'Kidney',
(int) 166 => 'Liver',
(int) 167 => 'Lung',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Brain',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Ovary',
(int) 174 => 'Ovary',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Brain',
(int) 178 => 'Bladder',
(int) 179 => 'Brain',
(int) 180 => 'Breast',
(int) 181 => 'Liver',
(int) 182 => 'Muscle',
(int) 183 => 'Ovary',
(int) 184 => 'Placenta',
(int) 185 => 'Testis',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Placenta',
(int) 189 => 'Testis',
(int) 190 => 'Brain',
(int) 191 => 'Colon',
(int) 192 => 'Liver',
(int) 193 => 'Testis',
(int) 194 => 'Brain',
(int) 195 => 'Testis',
(int) 196 => 'Brain',
(int) 197 => 'Liver',
(int) 198 => 'Lung',
(int) 199 => 'Ovary',
(int) 200 => 'Placenta',
(int) 201 => 'Testis',
(int) 202 => 'Brain',
(int) 203 => 'Heart',
(int) 204 => 'Lung',
(int) 205 => 'Muscle',
(int) 206 => 'Ovary',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Kidney',
(int) 213 => 'Liver',
(int) 214 => 'Lung',
(int) 215 => 'Ovary',
(int) 216 => 'Placenta',
(int) 217 => 'Testis'
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000023927' => array(
[maximum depth reached]
),
'ENSDARG00000045045' => array(
[maximum depth reached]
),
'ENSDARG00000084915' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Muscle',
(int) 10 => 'Brain'
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
'ENSDARG00000008852' => array(
[maximum depth reached]
),
'ENSDARG00000045935' => array(
[maximum depth reached]
),
'ENSDARG00000054184' => array(
[maximum depth reached]
),
'ENSDARG00000060962' => array(
[maximum depth reached]
),
'ENSDARG00000074813' => array(
[maximum depth reached]
),
'ENSDARG00000094877' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Brain',
(int) 24 => 'Kidney',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000109911' => 'elongator acetyltransferase complex subunit 4',
'ENSG00000148950' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSG00000170946' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSG00000170959' => 'doublecortin domain containing 1',
'ENSG00000221338' => null,
'ENSG00000221629' => null,
'ENSG00000228061' => null,
'ENSG00000255370' => 'cytochrome c, somatic pseudogene 25',
'ENSG00000255525' => null,
'ENSG00000007372' => 'paired box 6',
'ENSG00000049449' => 'reticulocalbin 1, EF-hand calcium binding domain',
'ENSG00000212551' => 'Small nucleolar RNA U3',
'ENSG00000227160' => 'thioesterase superfamily member 7, pseudogene',
'ENSG00000254584' => null,
'ENSG00000254627' => null,
'ENSG00000254836' => null,
'ENSG00000255252' => null,
'ENSG00000255375' => null,
'ENSG00000255490' => 'eukaryotic translation initiation factor 4A2 pseudogene 5',
'ENSMUSG00000005973' => 'reticulocalbin 1',
'ENSMUSG00000027166' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSMUSG00000027167' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSMUSG00000027168' => 'paired box 6',
'ENSMUSG00000042670' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSMUSG00000055312' => 'thioesterase superfamily member 7',
'ENSMUSG00000074981' => 'doublecortin domain containing 5',
'ENSMUSG00000080859' => 'ribosomal protein L10, pseudogene 1',
'ENSMUSG00000081258' => 'predicted gene 14013',
'ENSMUSG00000081701' => 'predicted gene 13890',
'ENSMUSG00000083425' => 'predicted gene 13992',
'ENSMUSG00000084571' => 'nuclear encoded rRNA 5S 201',
'ENSMUSG00000084870' => 'predicted gene 13954',
'ENSMUSG00000086029' => 'paired box 6 opposite strand 1',
'ENSMUSG00000086764' => 'RIKEN cDNA 4930527A07 gene',
'ENSMUSG00000087225' => 'predicted gene 14014',
'ENSMUSG00000087226' => 'predicted gene 14015',
'ENSMUSG00000093363' => 'predicted gene, 22002',
'ENSMUSG00000100156' => 'predicted gene 29053',
'ENSDARG00000023927' => 'DnaJ (Hsp40) homolog, subfamily C, member 24',
'ENSDARG00000045045' => 'paired box gene 6a',
'ENSDARG00000084014' => '5S ribosomal RNA',
'ENSDARG00000084915' => '5S ribosomal RNA',
'ENSDARG00000008852' => 'elongation protein 4 homolog (S. cerevisiae)',
'ENSDARG00000045935' => 'IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)',
'ENSDARG00000054184' => 'bloodthirsty-related gene family, member 6',
'ENSDARG00000060962' => 'bloodthirsty-related gene family, member 4',
'ENSDARG00000074813' => 'bloodthirsty-related gene family, member 5',
'ENSDARG00000084280' => '5S ribosomal RNA',
'ENSDARG00000084639' => '5S ribosomal RNA',
'ENSDARG00000094877' => 'bloodthirsty-related gene family, member 7'
)
$gene_name_arr = array(
'ENSG00000109911' => 'ELP4',
'ENSG00000148950' => 'IMMP1L',
'ENSG00000170946' => 'DNAJC24',
'ENSG00000170959' => 'DCDC1',
'ENSG00000221338' => 'AC108456.1',
'ENSG00000221629' => 'AL162614.1',
'ENSG00000228061' => 'Z83001.1',
'ENSG00000255370' => 'CYCSP25',
'ENSG00000255525' => 'RP1-296L11.1',
'ENSG00000007372' => 'PAX6',
'ENSG00000049449' => 'RCN1',
'ENSG00000212551' => 'U3',
'ENSG00000227160' => 'THEM7P',
'ENSG00000254584' => 'RP1-17K7.2',
'ENSG00000254627' => 'RP1-17K7.1',
'ENSG00000254836' => 'RP1-17K7.3',
'ENSG00000255252' => 'RP1-65P5.3',
'ENSG00000255375' => 'RP1-65P5.5',
'ENSG00000255490' => 'EIF4A2P5',
'ENSMUSG00000005973' => 'Rcn1',
'ENSMUSG00000027166' => 'Dnajc24',
'ENSMUSG00000027167' => 'Elp4',
'ENSMUSG00000027168' => 'Pax6',
'ENSMUSG00000042670' => 'Immp1l',
'ENSMUSG00000055312' => 'Them7',
'ENSMUSG00000074981' => 'Dcdc5',
'ENSMUSG00000080859' => 'Rpl10-ps1',
'ENSMUSG00000081258' => 'Gm14013',
'ENSMUSG00000081701' => 'Gm13890',
'ENSMUSG00000083425' => 'Gm13992',
'ENSMUSG00000084571' => 'n-R5s201',
'ENSMUSG00000084870' => 'Gm13954',
'ENSMUSG00000086029' => 'Pax6os1',
'ENSMUSG00000086764' => '4930527A07Rik',
'ENSMUSG00000087225' => 'Gm14014',
'ENSMUSG00000087226' => 'Gm14015',
'ENSMUSG00000093363' => 'Gm22002',
'ENSMUSG00000100156' => 'RP23-245K23.3',
'ENSDARG00000023927' => 'dnajc24',
'ENSDARG00000045045' => 'pax6a',
'ENSDARG00000084014' => '5S_rRNA',
'ENSDARG00000084915' => '5S_rRNA',
'ENSDARG00000008852' => 'elp4',
'ENSDARG00000045935' => 'immp1l',
'ENSDARG00000054184' => 'btr06',
'ENSDARG00000060962' => 'btr04',
'ENSDARG00000074813' => 'btr05',
'ENSDARG00000084280' => '5S_rRNA',
'ENSDARG00000084639' => '5S_rRNA',
'ENSDARG00000094877' => 'btr07'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0001',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '30717111',
'seq_end' => '31639896',
'region_length' => '922785',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0002',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31639896',
'seq_end' => '31819124',
'region_length' => '179228',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0003',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31819125',
'seq_end' => '31842092',
'region_length' => '22967',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0004',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31842093',
'seq_end' => '32226008',
'region_length' => '383915',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0005',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '105301487',
'seq_end' => '106575818',
'region_length' => '1274331',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0006',
'tax_id' => '7955',
'chromosome' => '25',
'seq_start' => '15074419',
'seq_end' => '15472105',
'region_length' => '397686',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0007',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '16664841',
'seq_end' => '17056005',
'region_length' => '391164',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 71 => 'Brain',
(int) 136 => 'Breast',
(int) 172 => 'Colon',
(int) 211 => 'Heart',
(int) 257 => 'Kidney',
(int) 301 => 'Liver',
(int) 350 => 'Lung',
(int) 389 => 'Muscle',
(int) 429 => 'Ovary',
(int) 475 => 'Placenta',
(int) 515 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 203
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000350638' => array(
'start' => '31509750',
'end' => '31783998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-001'
),
'ENST00000379163' => array(
'start' => '31509770',
'end' => '31783771',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-004'
),
'ENST00000395934' => array(
'start' => '31509778',
'end' => '31783775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ELP4-003'
),
'ENST00000474374' => array(
'start' => '31509771',
'end' => '31650221',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ELP4-002'
),
'ENST00000278200' => array(
'start' => '31432402',
'end' => '31509622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-001'
),
'ENST00000526776' => array(
'start' => '31432401',
'end' => '31509574',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IMMP1L-012'
),
'ENST00000527184' => array(
'start' => '31449030',
'end' => '31509592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-013'
),
'ENST00000528161' => array(
'start' => '31452198',
'end' => '31509563',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IMMP1L-004'
),
'ENST00000529749' => array(
'start' => '31456260',
'end' => '31509603',
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'start' => '105682508',
'end' => '105692265',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-020'
),
'ENSMUST00000138365' => array(
'start' => '105682537',
'end' => '105691723',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-021'
),
'ENSMUST00000140173' => array(
'start' => '105682463',
'end' => '105692233',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-019'
),
'ENSMUST00000142772' => array(
'start' => '105668935',
'end' => '105683870',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pax6-015'
),
'ENSMUST00000145744' => array(
'start' => '105682547',
'end' => '105692243',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-022'
),
'ENSMUST00000146803' => array(
'start' => '105685322',
'end' => '105697364',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-026'
),
'ENSMUST00000147923' => array(
'start' => '105673963',
'end' => '105675876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-005'
),
'ENSMUST00000147946' => array(
'start' => '105692483',
'end' => '105693125',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pax6-027'
),
'ENSMUST00000153011' => array(
'start' => '105679867',
'end' => '105692222',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-018'
),
'ENSMUST00000153639' => array(
'start' => '105675191',
'end' => '105675822',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pax6-016'
),
'ENSMUST00000154302' => array(
'start' => '105681712',
'end' => '105684982',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pax6-024'
),
'ENSMUST00000154643' => array(
'start' => '105682535',
'end' => '105696353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pax6-014'
),
'ENSMUST00000155081' => array(
'start' => '105682637',
'end' => '105691694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-023'
),
'ENSMUST00000156216' => array(
'start' => '105678391',
'end' => '105685795',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pax6-017'
),
'ENSMUST00000167211' => array(
'start' => '105675513',
'end' => '105697361',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pax6-201'
),
'ENSMUST00000172990' => array(
'start' => '105675109',
'end' => '105675972',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pax6-010'
),
'ENSMUST00000037499' => array(
'start' => '105904638',
'end' => '105965558',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Immp1l-001'
),
'ENSMUST00000068813' => array(
'start' => '105224320',
'end' => '105379796',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Them7-001'
),
'ENSMUST00000131060' => array(
'start' => '105224342',
'end' => '105379035',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Them7-002'
),
'ENSMUST00000037284' => array(
'start' => '106383687',
'end' => '106406151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dcdc5-004'
),
'ENSMUST00000122388' => array(
'start' => '106038218',
'end' => '106385623',
'transcript_biotype' => 'unitary_pseudogene',
'transcript_name' => 'Dcdc5-001'
),
'ENSMUST00000126340' => array(
'start' => '106003336',
'end' => '106040626',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dcdc5-002'
),
'ENSMUST00000148101' => array(
'start' => '106226454',
'end' => '106336141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dcdc5-005'
),
'ENSMUST00000152776' => array(
'start' => '106222057',
'end' => '106385623',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dcdc5-003'
),
'ENSMUST00000119438' => array(
'start' => '105554201',
'end' => '105554845',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'Rpl10-ps1-001'
),
'ENSMUST00000119006' => array(
'start' => '106265307',
'end' => '106265576',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14013-001'
),
'ENSMUST00000117578' => array(
'start' => '105537093',
'end' => '105537482',
'transcript_biotype' => 'transcribed_processed_pseudogene',
'transcript_name' => 'Gm13890-001'
),
'ENSMUST00000120558' => array(
'start' => '106015200',
'end' => '106015355',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13992-001'
),
'ENSMUST00000122622' => array(
'start' => '105997032',
'end' => '105997147',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s201-201'
),
'ENSMUST00000123441' => array(
'start' => '105708999',
'end' => '105710098',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm13954-001'
),
'ENSMUST00000126948' => array(
'start' => '105536939',
'end' => '105670280',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Pax6os1-002'
),
'ENSMUST00000149133' => array(
'start' => '105536080',
'end' => '105670330',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Pax6os1-001'
),
'ENSMUST00000130677' => array(
'start' => '105476501',
'end' => '105477357',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930527A07Rik-001'
),
'ENSMUST00000156718' => array(
'start' => '106574791',
'end' => '106580840',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14014-001'
),
'ENSMUST00000130634' => array(
'start' => '106463823',
'end' => '106523103',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14015-001'
),
'ENSMUST00000175622' => array(
'start' => '105992757',
'end' => '105992881',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm22002-201'
),
'ENSMUST00000187484' => array(
'start' => '106038463',
'end' => '106040496',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-245K23.3-001'
),
'ENSDART00000035714' => array(
'start' => '15130720',
'end' => '15159786',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'dnajc24-001'
),
'ENSDART00000066224' => array(
'start' => '15289722',
'end' => '15409410',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-201'
),
'ENSDART00000066225' => array(
'start' => '15289718',
'end' => '15310371',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-002'
),
'ENSDART00000124577' => array(
'start' => '15289722',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-202'
),
'ENSDART00000128877' => array(
'start' => '15289722',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-203'
),
'ENSDART00000129319' => array(
'start' => '15290670',
'end' => '15305832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-204'
),
'ENSDART00000131523' => array(
'start' => '15290408',
'end' => '15306040',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-005'
),
'ENSDART00000132425' => array(
'start' => '15295204',
'end' => '15306015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-006'
),
'ENSDART00000133390' => array(
'start' => '15294637',
'end' => '15301046',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-009'
),
'ENSDART00000133941' => array(
'start' => '15299740',
'end' => '15310426',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-003'
),
'ENSDART00000139544' => array(
'start' => '15294633',
'end' => '15301119',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-008'
),
'ENSDART00000144597' => array(
'start' => '15299602',
'end' => '15306117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-007'
),
'ENSDART00000148420' => array(
'start' => '15289718',
'end' => '15310396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-001'
),
'ENSDART00000148771' => array(
'start' => '15300171',
'end' => '15301036',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'pax6a-010'
),
'ENSDART00000149131' => array(
'start' => '15300376',
'end' => '15310458',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pax6a-004'
),
'ENSDART00000119414' => array(
'start' => '15380274',
'end' => '15380407',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.469-201'
),
'ENSDART00000120315' => array(
'start' => '15201465',
'end' => '15201579',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.896-201'
),
'ENSDART00000002498' => array(
'start' => '16671553',
'end' => '16799176',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-201'
),
'ENSDART00000145993' => array(
'start' => '16671551',
'end' => '16761183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'elp4-001'
),
'ENSDART00000114062' => array(
'start' => '16799293',
'end' => '16830013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'immp1l-201'
),
'ENSDART00000076318' => array(
'start' => '16970942',
'end' => '16980218',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr06-201'
),
'ENSDART00000138523' => array(
'start' => '16950705',
'end' => '16960473',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr04-001'
),
'ENSDART00000076300' => array(
'start' => '16963727',
'end' => '16970800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr05-201'
),
'ENSDART00000119680' => array(
'start' => '16879629',
'end' => '16879757',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.593-201'
),
'ENSDART00000120039' => array(
'start' => '16969324',
'end' => '16969442',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.759-201'
),
'ENSDART00000142619' => array(
'start' => '16997382',
'end' => '17000277',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'btr07-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JA_0001' => array(
'genes_in_region' => array(
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000170959' => array(
[maximum depth reached]
),
'ENSG00000221338' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
),
'ENSG00000255370' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Bladder',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Kidney',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Bladder',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Lung',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Adrenal',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Adipose',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Heart',
(int) 90 => 'Ovary',
(int) 91 => 'Bladder',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Bladder',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Brain',
(int) 102 => 'Ovary',
(int) 103 => 'Kidney',
(int) 104 => 'Brain',
(int) 105 => 'Breast',
(int) 106 => 'Colon',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Brain',
(int) 111 => 'Heart',
(int) 112 => 'Liver',
(int) 113 => 'Muscle',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Liver',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Heart',
(int) 127 => 'Lung',
(int) 128 => 'Testis'
)
),
'CIL_0007JA_0002' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000109911' => array(
[maximum depth reached]
),
'ENSG00000228061' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Testis',
(int) 7 => 'Brain',
(int) 8 => 'Kidney',
(int) 9 => 'Ovary',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Testis',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Adrenal',
(int) 32 => 'Breast',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Testis',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Heart',
(int) 52 => 'Lung',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Bladder',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Lung',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Placenta',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Colon',
(int) 95 => 'Heart',
(int) 96 => 'Liver',
(int) 97 => 'Lung',
(int) 98 => 'Brain',
(int) 99 => 'Heart',
(int) 100 => 'Liver',
(int) 101 => 'Muscle',
(int) 102 => 'Testis',
(int) 103 => 'Adrenal',
(int) 104 => 'Bladder',
(int) 105 => 'Brain',
(int) 106 => 'Breast',
(int) 107 => 'Colon',
(int) 108 => 'Heart',
(int) 109 => 'Liver',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007JA_0004' => array(
'genes_in_region' => array(
'ENSG00000049449' => array(
[maximum depth reached]
),
'ENSG00000227160' => array(
[maximum depth reached]
),
'ENSG00000254584' => array(
[maximum depth reached]
),
'ENSG00000254627' => array(
[maximum depth reached]
),
'ENSG00000254836' => array(
[maximum depth reached]
),
'ENSG00000255375' => array(
[maximum depth reached]
),
'ENSG00000255490' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Breast',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Testis',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Colon',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Ovary',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Testis',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Testis',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Testis',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Testis'
)
),
'CIL_0007JA_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005973' => array(
[maximum depth reached]
),
'ENSMUSG00000027166' => array(
[maximum depth reached]
),
'ENSMUSG00000027167' => array(
[maximum depth reached]
),
'ENSMUSG00000042670' => array(
[maximum depth reached]
),
'ENSMUSG00000055312' => array(
[maximum depth reached]
),
'ENSMUSG00000074981' => array(
[maximum depth reached]
),
'ENSMUSG00000080859' => array(
[maximum depth reached]
),
'ENSMUSG00000081258' => array(
[maximum depth reached]
),
'ENSMUSG00000084870' => array(
[maximum depth reached]
),
'ENSMUSG00000086029' => array(
[maximum depth reached]
),
'ENSMUSG00000086764' => array(
[maximum depth reached]
),
'ENSMUSG00000087225' => array(
[maximum depth reached]
),
'ENSMUSG00000087226' => array(
[maximum depth reached]
),
'ENSMUSG00000093363' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Muscle',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Adipose',
(int) 37 => 'Adrenal',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Liver',
(int) 55 => 'Muscle',
(int) 56 => 'Heart',
(int) 57 => 'Muscle',
(int) 58 => 'Placenta',
(int) 59 => 'Bladder',
(int) 60 => 'Breast',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Adrenal',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Ovary',
(int) 85 => 'Testis',
(int) 86 => 'Bladder',
(int) 87 => 'Heart',
(int) 88 => 'Liver',
(int) 89 => 'Testis',
(int) 90 => 'Brain',
(int) 91 => 'Colon',
(int) 92 => 'Placenta',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Brain',
(int) 96 => 'Kidney',
(int) 97 => 'Liver',
(int) 98 => 'Placenta',
(int) 99 => 'Colon',
(int) 100 => 'Colon',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Brain',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Heart',
(int) 107 => 'Bladder',
(int) 108 => 'Breast',
(int) 109 => 'Liver',
(int) 110 => 'Placenta',
(int) 111 => 'Testis',
(int) 112 => 'Colon',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Bladder',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Colon',
(int) 127 => 'Liver',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Colon',
(int) 133 => 'Adipose',
(int) 134 => 'Adrenal',
(int) 135 => 'Bladder',
(int) 136 => 'Brain',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Heart',
(int) 140 => 'Kidney',
(int) 141 => 'Liver',
(int) 142 => 'Lung',
(int) 143 => 'Muscle',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Adrenal',
(int) 149 => 'Bladder',
(int) 150 => 'Brain',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Kidney',
(int) 155 => 'Liver',
(int) 156 => 'Ovary',
(int) 157 => 'Placenta',
(int) 158 => 'Testis',
(int) 159 => 'Adipose',
(int) 160 => 'Adrenal',
(int) 161 => 'Brain',
(int) 162 => 'Breast',
(int) 163 => 'Colon',
(int) 164 => 'Heart',
(int) 165 => 'Kidney',
(int) 166 => 'Liver',
(int) 167 => 'Lung',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Brain',
(int) 171 => 'Ovary',
(int) 172 => 'Testis',
(int) 173 => 'Ovary',
(int) 174 => 'Ovary',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Brain',
(int) 178 => 'Bladder',
(int) 179 => 'Brain',
(int) 180 => 'Breast',
(int) 181 => 'Liver',
(int) 182 => 'Muscle',
(int) 183 => 'Ovary',
(int) 184 => 'Placenta',
(int) 185 => 'Testis',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Placenta',
(int) 189 => 'Testis',
(int) 190 => 'Brain',
(int) 191 => 'Colon',
(int) 192 => 'Liver',
(int) 193 => 'Testis',
(int) 194 => 'Brain',
(int) 195 => 'Testis',
(int) 196 => 'Brain',
(int) 197 => 'Liver',
(int) 198 => 'Lung',
(int) 199 => 'Ovary',
(int) 200 => 'Placenta',
(int) 201 => 'Testis',
(int) 202 => 'Brain',
(int) 203 => 'Heart',
(int) 204 => 'Lung',
(int) 205 => 'Muscle',
(int) 206 => 'Ovary',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Kidney',
(int) 213 => 'Liver',
(int) 214 => 'Lung',
(int) 215 => 'Ovary',
(int) 216 => 'Placenta',
(int) 217 => 'Testis'
)
),
'CIL_0007JA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000023927' => array(
[maximum depth reached]
),
'ENSDARG00000045045' => array(
[maximum depth reached]
),
'ENSDARG00000084915' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Brain',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Muscle',
(int) 10 => 'Brain'
)
),
'CIL_0007JA_0007' => array(
'genes_in_region' => array(
'ENSDARG00000008852' => array(
[maximum depth reached]
),
'ENSDARG00000045935' => array(
[maximum depth reached]
),
'ENSDARG00000054184' => array(
[maximum depth reached]
),
'ENSDARG00000060962' => array(
[maximum depth reached]
),
'ENSDARG00000074813' => array(
[maximum depth reached]
),
'ENSDARG00000094877' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Heart',
(int) 11 => 'Kidney',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Brain',
(int) 24 => 'Kidney',
(int) 25 => 'Brain',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JA_0003',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '31819125',
'seq_end' => '31842092',
'region_length' => '22967',
'region_type' => 'UCNEbase',
'el_id' => 'PAX6'
)
)
$gene_el = array(
'ENST00000429821' => array(
'Brain' => array(
'average_FPKM' => '0.238',
'stddev_FPKM' => '0.05'
),
'Breast' => array(
'average_FPKM' => '3.039',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.492',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.141',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.594',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.225',
'stddev_FPKM' => '0.00'
)
),
'ENST00000434742' => array(
'Brain' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.121',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.358',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
),
'ENST00000454509' => array(
'Adrenal' => array(
'average_FPKM' => '0.215',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.100',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.12'
),
'Breast' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.097',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.040',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.555',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.345',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.081',
'stddev_FPKM' => '0.02'
)
)
)
$gene_key = 'ENSG00000228061'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.215',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.100',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.12'
),
'Breast' => array(
'average_FPKM' => '0.041',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.097',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.040',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.555',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.345',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.081',
'stddev_FPKM' => '0.02'
)
)
$tran_key = 'ENST00000454509'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108