C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box gene 6a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000066224 pax6a-201 ENSDARG00000045045 7955 - 25:15289722-15409410 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSDART00000066224
Transcript ID Brain
ENSDART00000066224 0.633±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JA CIL_0007JA_0006 UCNEbase 25:15074419-15472105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0009952 IMP anterior/posterior pattern specification
GO:0030900 IGI forebrain development
GO:0030902 IMP hindbrain development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090391 Pax6-013 protein_coding Mus_musculus 0 817
ENSMUST00000090397 Pax6-011 protein_coding Mus_musculus 0 917
ENSMUST00000111082 Pax6-012 protein_coding Mus_musculus 0 917
ENSMUST00000111083 Pax6-009 protein_coding Mus_musculus 0 917
ENSMUST00000111085 Pax6-008 protein_coding Mus_musculus 0 817
ENSMUST00000111086 Pax6-001 protein_coding Mus_musculus 0 817
ENSMUST00000111087 Pax6-002 protein_coding Mus_musculus 0 917
ENSMUST00000111088 Pax6-004 protein_coding Mus_musculus 2e-30 139
ENSMUST00000135412 Pax6-020 processed_transcript Mus_musculus 0 560
ENSMUST00000138365 Pax6-021 processed_transcript Mus_musculus 0 235
ENSMUST00000140173 Pax6-019 processed_transcript Mus_musculus 0 442
ENSMUST00000145744 Pax6-022 processed_transcript Mus_musculus 0 267
ENSMUST00000146803 Pax6-026 processed_transcript Mus_musculus 0 628
ENSMUST00000153011 Pax6-018 processed_transcript Mus_musculus 0 436
ENSMUST00000154643 Pax6-014 retained_intron Mus_musculus 0 628
ENSMUST00000155081 Pax6-023 processed_transcript Mus_musculus 0 501
ENSMUST00000167211 Pax6-201 protein_coding Mus_musculus 0 817
ENST00000241001 PAX6-002 protein_coding Homo_sapiens 0 966
ENST00000379107 PAX6-011 protein_coding Homo_sapiens 0 861
ENST00000379109 PAX6-004 protein_coding Homo_sapiens 0 966
ENST00000379111 PAX6-005 protein_coding Homo_sapiens 0 966
ENST00000379115 PAX6-001 protein_coding Homo_sapiens 0 861
ENST00000379123 PAX6-003 protein_coding Homo_sapiens 0 966
ENST00000379129 PAX6-009 protein_coding Homo_sapiens 0 861
ENST00000379132 PAX6-008 protein_coding Homo_sapiens 0 966
ENST00000419022 PAX6-201 protein_coding Homo_sapiens 0 861
ENST00000455099 PAX6-016 protein_coding Homo_sapiens 9.80909e-45 183
ENST00000470027 PAX6-006 retained_intron Homo_sapiens 0 667
ENST00000471303 PAX6-014 processed_transcript Homo_sapiens 0 556
ENST00000481563 PAX6-015 processed_transcript Homo_sapiens 0 361
ENST00000494377 PAX6-007 retained_intron Homo_sapiens 0 667
ENST00000531910 PAX6-027 processed_transcript Homo_sapiens 0 411
ENST00000533333 PAX6-019 retained_intron Homo_sapiens 0 870
ENST00000534390 PAX6-026 retained_intron Homo_sapiens 0 416
ENST00000606377 PAX6-202 protein_coding Homo_sapiens 0 861

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