C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box gene 6b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000045936 pax6b 7955 + 7:16636712-16662410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000014572 pax6b-201 16636712-16662393 protein_coding
  ENSDART00000134696 pax6b-004 16641365-16648250 protein_coding
  ENSDART00000137235 pax6b-006 16646405-16649546 processed_transcript
  ENSDART00000138689 pax6b-007 16646405-16648406 processed_transcript
  ENSDART00000144765 pax6b-005 16636712-16648250 protein_coding
  ENSDART00000145946 pax6b-001 16636712-16662410 protein_coding
  ENSDART00000146704 pax6b-003 16641007-16648250 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartENSDART00000145946
Transcript ID Brain Heart
ENSDART00000145946 1.584±0.00 0.116±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017T CIL_00017T_0001 CGP 7:16589012-16662410
CIL_0000ZD CIL_0000ZD_0001 CGP 7:16636712-16799176

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0002088 IMP lens development in camera-type eye
GO:0002089 IMP lens morphogenesis in camera-type eye
GO:0003309 IMP type B pancreatic cell differentiation
GO:0003310 IMP pancreatic A cell differentiation
GO:0003311 IMP pancreatic D cell differentiation
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0009952 IMP anterior/posterior pattern specification
GO:0030902 IMP hindbrain development
GO:0043565 IEA sequence-specific DNA binding
GO:0090104 IMP pancreatic epsilon cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000007372 PAX6 paired box 6 protein_coding Homo_sapiens
ENSMUSG00000027168 Pax6 paired box 6 protein_coding Mus_musculus

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