C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PI-3-kinase-related kinase SMG-1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000054570 smg1 7955 - 3:31269149-31309502 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000076764 smg1-001 31269149-31309501 protein_coding
  ENSDART00000076796 smg1-201 31270318-31309502 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000076764ENSDART00000076796
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000076764 11.276±0.67 2.076±2.06 2.443±1.31 1.915±0.00 2.235±0.00
ENSDART00000076796 1.773±0.00 0.940±0.00 0.427±0.02 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0001 CGP 3:31256010-31309502

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016740 IEA transferase activity
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000157106 SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase protein_coding Homo_sapiens
ENSG00000261740 RP11-345J4.5 BolA-like protein 2 {ECO:0000313|Ensembl:ENSP00000457995} protein_coding Homo_sapiens
ENSMUSG00000030655 Smg1 SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) protein_coding Mus_musculus

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