C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMG1 phosphatidylinositol 3-kinase-related kinase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157106 SMG1 9606 - 16:18804853-18926454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330588 SMG1-201 18884747-18900097 protein_coding
  ENST00000446231 SMG1-001 18804853-18926454 protein_coding
  ENST00000532700 SMG1-002 18884105-18926158 protein_coding
  ENST00000561940 SMG1-016 18812011-18816179 retained_intron
  ENST00000561947 SMG1-004 18875102-18896956 protein_coding
  ENST00000562668 SMG1-018 18847739-18849370 retained_intron
  ENST00000563235 SMG1-006 18857786-18876305 protein_coding
  ENST00000563448 SMG1-012 18838461-18850361 retained_intron
  ENST00000563836 SMG1-015 18896801-18911713 protein_coding
  ENST00000565224 SMG1-003 18875608-18900044 protein_coding
  ENST00000565324 SMG1-005 18807760-18896874 protein_coding
  ENST00000566328 SMG1-017 18866147-18868218 protein_coding
  ENST00000567737 SMG1-014 18924916-18926039 processed_transcript
  ENST00000568038 SMG1-009 18866687-18872550 nonsense_mediated_decay
  ENST00000568239 SMG1-007 18875947-18879661 retained_intron
  ENST00000569122 SMG1-013 18890889-18925750 protein_coding
  ENST00000569764 SMG1-010 18856338-18861487 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000446231ENST00000565324ENST00000569764
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000446231 1.297±0.00 3.043±0.00 1.319±0.57 3.398±0.00 4.079±0.00 1.690±0.00 N/A 1.867±1.54 N/A 2.940±0.00 1.748±0.95 0.663±0.16 1.294±0.08
ENST00000565324 N/A 1.883±0.00 2.645±0.00 9.557±0.00 5.829±0.00 1.959±0.00 5.987±0.00 6.950±0.00 8.854±0.00 8.076±0.00 4.342±0.00 N/A N/A
ENST00000569764 3.930±0.00 N/A 1.949±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0002 CGP 16:18791667-18926454

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 NAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672 TAS protein kinase activity
GO:0004674 NAS protein serine/threonine kinase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006281 IEA DNA repair
GO:0006406 TAS mRNA export from nucleus
GO:0006950 IDA response to stress
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0044822 IDA poly(A) RNA binding
GO:0046777 IDA protein autophosphorylation
GO:0046854 IDA phosphatidylinositol phosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054570 smg1 PI-3-kinase-related kinase SMG-1 protein_coding Danio_rerio
ENSMUSG00000030655 Smg1 SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) protein_coding Mus_musculus

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