C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030655 Smg1 10090 - 7:118131308-118243637 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032891 Smg1-001 118131308-118243637 protein_coding
  ENSMUST00000178025 Smg1-006 118140785-118141799 protein_coding
  ENSMUST00000179047 Smg1-002 118200696-118243627 protein_coding
  ENSMUST00000179331 Smg1-005 118134047-118217830 protein_coding
  ENSMUST00000179847 Smg1-004 118203765-118243349 retained_intron
  ENSMUST00000180009 Smg1-003 118196195-118243637 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032891ENSMUST00000179047ENSMUST00000179331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032891 6.883±3.47 5.763±0.71 5.878±2.30 3.445±0.05 9.121±3.32 5.505±1.53 1.471±0.44 3.464±1.28 2.644±1.62 8.465±1.50 2.698±1.22 8.008±4.07 5.861±2.26 5.888±2.81
ENSMUST00000179047 N/A 11.574±2.92 N/A N/A 8.454±0.15 N/A N/A N/A N/A N/A N/A 10.985±1.73 N/A N/A
ENSMUST00000179331 1.357±0.00 N/A N/A N/A N/A N/A N/A N/A 0.469±0.00 N/A N/A N/A 4.837±0.00 3.508±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0003 CGP 7:118118891-118243637

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006950 IEA response to stress
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0044822 IEA poly(A) RNA binding
GO:0046777 IEA protein autophosphorylation
GO:0046854 IEA phosphatidylinositol phosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054570 smg1 PI-3-kinase-related kinase SMG-1 protein_coding Danio_rerio
ENSG00000157106 SMG1 SMG1 phosphatidylinositol 3-kinase-related kinase protein_coding Homo_sapiens

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