C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fraser syndrome 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000054619 fras1 7955 + 5:40486956-40687225 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000076845 fras1-201 40486956-40686201 protein_coding
  ENSDART00000097856 fras1-202 40500706-40686201 protein_coding
  ENSDART00000137112 fras1-001 40514078-40687225 protein_coding
  ENSDART00000144008 fras1-002 40648389-40651608 processed_transcript

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000076845ENSDART00000097856ENSDART00000137112
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000076845 N/A N/A N/A 0.020±0.00 0.184±0.00
ENSDART00000097856 0.280±0.00 0.098±0.00 N/A N/A N/A
ENSDART00000137112 0.162±0.00 0.237±0.15 0.398±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051W CIL_00051W_0001 CGP 5:40425682-40687225
CIL_000522 CIL_000522_0001 CGP 5:40486956-40696080

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0007154 IEA cell communication
GO:0007492 IMP endoderm development
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0033333 IMP fin development
GO:0033334 IMP fin morphogenesis
GO:0048703 IMP embryonic viscerocranium morphogenesis
GO:0071711 IMP basement membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000138759 FRAS1 Fraser extracellular matrix complex subunit 1 protein_coding Homo_sapiens
ENSMUSG00000034687 Fras1 Fraser syndrome 1 homolog (human) protein_coding Mus_musculus

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