C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fraser extracellular matrix complex subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138759 FRAS1 9606 + 4:78057570-78544269 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264899 FRAS1-201 78057980-78446558 protein_coding
  ENST00000325942 FRAS1-001 78057570-78446558 protein_coding
  ENST00000502446 FRAS1-004 78245231-78319653 protein_coding
  ENST00000508900 FRAS1-005 78255246-78338037 protein_coding
  ENST00000508909 FRAS1-003 78057604-78072107 nonsense_mediated_decay
  ENST00000509802 FRAS1-010 78448058-78450455 retained_intron
  ENST00000510944 FRAS1-007 78419038-78446633 protein_coding
  ENST00000512123 FRAS1-008 78438668-78544269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325942ENST00000508900ENST00000512123
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325942 N/A 3.495±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508900 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A
ENST00000512123 0.423±0.00 1.747±0.00 0.376±0.00 0.173±0.00 0.812±0.26 0.095±0.03 2.003±1.54 0.041±0.01 1.460±0.67 0.757±0.00 0.727±0.46 2.176±1.37 0.364±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051W CIL_00051W_0002 CGP 4:77862520-78544269
CIL_000522 CIL_000522_0002 CGP 4:78057570-78610451

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002009 IEA morphogenesis of an epithelium
GO:0003338 IEA metanephros morphogenesis
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005604 IEA basement membrane
GO:0005886 IEA plasma membrane
GO:0007154 IEA cell communication
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030326 IEA embryonic limb morphogenesis
GO:0031012 ISS extracellular matrix
GO:0043588 IEA skin development
GO:0046872 IEA metal ion binding
GO:0060021 IEA palate development
GO:0061618 ISS sublamina densa

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054619 fras1 Fraser syndrome 1 protein_coding Danio_rerio
ENSMUSG00000034687 Fras1 Fraser syndrome 1 homolog (human) protein_coding Mus_musculus

Loading