C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S8a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000055996 rps8a 7955 + 2:26646616-26650038 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000078412 rps8a-001 26646616-26650038 protein_coding
  ENSDART00000131292 rps8a-002 26646701-26649476 retained_intron
  ENSDART00000136937 rps8a-005 26646731-26649445 processed_transcript
  ENSDART00000141010 rps8a-003 26646704-26649464 processed_transcript
  ENSDART00000146173 rps8a-006 26649057-26649817 retained_intron
  ENSDART00000148010 rps8a-004 26646732-26649475 processed_transcript

Danio rerio EnsemblZv9

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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000078412ENSDART00000136937
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000078412 86.918±59.38 790.520±230.51 1191.060±0.00 426.470±0.00 469.224±0.00
ENSDART00000136937 106.201±11.08 657.541±0.00 N/A 239.062±0.00 350.427±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000638 CIL_000638_0001 CGP 2:26646616-26657227

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000462 IBA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0006414 IBA translational elongation
GO:0009790 IMP embryo development
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030529 IEA ribonucleoprotein complex
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000142937 RPS8 ribosomal protein S8 protein_coding Homo_sapiens
ENSMUSG00000047675 Rps8 ribosomal protein S8 protein_coding Mus_musculus

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