C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142937 RPS8 9606 + 1:44775251-44778779 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372209 RPS8-003 44775573-44778779 protein_coding
  ENST00000396651 RPS8-001 44775437-44778779 protein_coding
  ENST00000464658 RPS8-006 44777226-44778779 processed_transcript
  ENST00000470475 RPS8-005 44775578-44777525 processed_transcript
  ENST00000474582 RPS8-008 44777903-44778739 processed_transcript
  ENST00000484599 RPS8-007 44777550-44778663 processed_transcript
  ENST00000485390 RPS8-004 44775636-44778779 processed_transcript
  ENST00000497035 RPS8-002 44775251-44778087 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396651ENST00000497035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396651 390.495±0.00 536.234±0.00 39.093±0.00 98.074±24.01 234.939±30.59 315.628±144.98 115.171±71.38 242.397±118.43 208.500±24.06 374.822±261.80 235.813±133.34 1024.753±1172.82 1058.344±652.30 305.146±0.00
ENST00000497035 170.402±0.00 294.141±0.00 N/A 100.797±0.00 186.343±0.00 342.121±0.00 N/A N/A 79.408±0.00 445.676±0.00 201.218±0.00 366.789±175.34 205.010±0.00 213.103±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477
CIL_000638 CIL_000638_0002 CGP 1:44775251-44787705

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000462 IBA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055996 rps8a ribosomal protein S8a protein_coding Danio_rerio
ENSMUSG00000047675 Rps8 ribosomal protein S8 protein_coding Mus_musculus

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