C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047675 Rps8 10090 - 4:117153827-117156243 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102696 Rps8-001 117153827-117156243 protein_coding
  ENSMUST00000127037 Rps8-004 117154372-117155181 retained_intron
  ENSMUST00000137423 Rps8-005 117153834-117154497 retained_intron
  ENSMUST00000140226 Rps8-002 117154391-117156084 retained_intron
  ENSMUST00000141219 Rps8-006 117154686-117156072 retained_intron
  ENSMUST00000144051 Rps8-007 117154510-117156069 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102696ENSMUST00000137423ENSMUST00000141219ENSMUST00000144051
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102696 109.403±45.34 27.314±3.99 507.359±14.05 165.083±95.52 106.793±39.96 84.645±9.01 75.133±3.79 114.537±24.97 305.592±291.37 85.747±8.74 213.416±14.25 201.758±186.79 381.209±213.06 51.862±2.70
ENSMUST00000137423 N/A N/A N/A 76.807±0.00 N/A N/A N/A N/A N/A N/A N/A 410.235±75.32 330.960±161.05 14.312±0.00
ENSMUST00000141219 N/A 52.253±8.57 N/A N/A N/A 265.746±36.37 N/A N/A 67.504±0.00 N/A N/A 253.834±67.68 N/A N/A
ENSMUST00000144051 116.716±72.50 49.527±10.78 242.447±18.04 100.859±10.43 136.637±66.90 299.850±21.03 52.766±19.15 91.616±15.45 147.561±56.65 160.075±29.63 N/A 196.645±19.48 212.468±11.98 37.010±16.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000462 IBA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006414 IBA translational elongation
GO:0016020 IEA membrane
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055996 rps8a ribosomal protein S8a protein_coding Danio_rerio
ENSG00000142937 RPS8 ribosomal protein S8 protein_coding Homo_sapiens

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