C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high-mobility group box 3a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000056725 hmgb3a 7955 + 7:27039093-27044149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000079262 hmgb3a-201 27041018-27044148 protein_coding
  ENSDART00000123056 hmgb3a-003 27039126-27042939 nonsense_mediated_decay
  ENSDART00000129924 hmgb3a-001 27039093-27044149 protein_coding
  ENSDART00000135728 hmgb3a-002 27039123-27042939 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000079262ENSDART00000129924
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000079262 90.254±22.43 18.089±3.64 5.178±0.44 0.110±0.00 4.606±0.00
ENSDART00000129924 202.638±44.84 78.055±0.00 20.521±0.00 N/A 10.752±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UN CIL_0000UN_0001 CGP 7:27004426-27044149

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000029993 HMGB3 high mobility group box 3 protein_coding Homo_sapiens
ENSMUSG00000015217 Hmgb3 high mobility group box 3 protein_coding Mus_musculus

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