C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group box 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015217 Hmgb3 10090 + X:71555918-71560676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015361 Hmgb3-002 71555941-71560676 protein_coding
  ENSMUST00000072699 Hmgb3-001 71555918-71560676 protein_coding
  ENSMUST00000088874 Hmgb3-004 71555990-71560676 protein_coding
  ENSMUST00000114582 Hmgb3-003 71555928-71560676 protein_coding
  ENSMUST00000123100 Hmgb3-005 71556946-71559273 protein_coding
  ENSMUST00000132145 Hmgb3-006 71557783-71559773 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015361ENSMUST00000072699ENSMUST00000088874ENSMUST00000114582ENSMUST00000123100ENSMUST00000132145
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015361 N/A N/A N/A N/A 1.158±0.00 N/A N/A N/A N/A N/A 0.784±0.22 8.952±4.90 0.524±0.00 N/A
ENSMUST00000072699 N/A N/A 1.948±0.36 17.326±11.72 0.190±0.00 N/A 1.590±0.02 1.012±0.00 53.155±27.09 N/A 0.415±0.09 6.619±0.90 5.454±7.45 2.737±0.70
ENSMUST00000088874 1.230±0.38 N/A 1.339±0.00 15.373±0.00 1.238±0.51 3.184±1.33 N/A 1.754±0.51 0.604±0.16 1.357±0.21 N/A 7.269±1.80 0.304±0.00 1.519±0.21
ENSMUST00000114582 4.786±2.55 125.384±54.27 4.401±0.61 40.594±28.13 4.110±2.25 9.565±2.02 9.060±2.85 8.049±1.69 15.950±16.83 6.471±1.18 1.038±0.36 23.324±14.61 5.316±5.63 5.849±2.85
ENSMUST00000123100 N/A N/A N/A 4.340±0.00 0.684±0.00 N/A N/A N/A N/A N/A 0.667±0.00 N/A N/A N/A
ENSMUST00000132145 N/A N/A N/A 1.620±0.00 0.396±0.00 N/A N/A N/A N/A N/A 0.793±0.22 8.960±2.84 1.450±0.67 2.513±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DG CIL_0009DG_0002 VISTA X:71400355-72001555
CIL_0000UN CIL_0000UN_0003 CGP X:71420060-71560676
CIL_0001AV CIL_0001AV_0002 CGP X:71555918-71669257

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0044822 IEA poly(A) RNA binding
GO:0045578 IDA negative regulation of B cell differentiation
GO:0045638 IDA negative regulation of myeloid cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006408 hmgb3b high-mobility group box 3b protein_coding Danio_rerio
ENSDARG00000056725 hmgb3a high-mobility group box 3a protein_coding Danio_rerio
ENSG00000029993 HMGB3 high mobility group box 3 protein_coding Homo_sapiens

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