C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000UN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056722-ENSDARG00000056725 CGP 7955 7:27004426-27044149
GeneTranscriptPositionBiotype
ENSDARG00000056722 (cd99l2)
CD99 antigen-like 2 		ENSDART00000079235 (cd99l2-201) 27004426-27020901 protein_coding
ENSDART00000079245 (cd99l2-202) 27007216-27021059 protein_coding
ENSDARG00000056725 (hmgb3a)
high-mobility group box 3a 		ENSDART00000079262 (hmgb3a-201) 27041018-27044148 protein_coding
ENSDART00000123056 (hmgb3a-003) 27039126-27042939 nonsense_mediated_decay
ENSDART00000129924 (hmgb3a-001) 27039093-27044149 protein_coding
ENSDART00000135728 (hmgb3a-002) 27039123-27042939 retained_intron

Danio rerio Ensembl (Zv9)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0000UN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102181-ENSG00000029993 CGP 9606 X:150766337-150990775
GeneTranscriptPositionBiotype
ENSG00000029993 (HMGB3)
high mobility group box 3 		ENST00000325307 (HMGB3-001) 150983286-150990775 protein_coding
ENST00000419110 (HMGB3-002) 150980509-150987877 protein_coding
ENST00000430118 (HMGB3-004) 150985531-150987297 protein_coding
ENST00000448905 (HMGB3-201) 150983406-150987932 protein_coding
ENST00000455596 (HMGB3-003) 150983385-150987892 protein_coding
ENSG00000102181 (CD99L2)
CD99 molecule-like 2 		ENST00000346693 (CD99L2-002) 150766337-150898630 processed_transcript
ENST00000355149 (CD99L2-201) 150766339-150898816 protein_coding
ENST00000370377 (CD99L2-001) 150766337-150898706 protein_coding
ENST00000418547 (CD99L2-003) 150776902-150831249 protein_coding
ENST00000437787 (CD99L2-202) 150766339-150898816 protein_coding
ENST00000466436 (CD99L2-005) 150768729-150898629 protein_coding
ENST00000491877 (CD99L2-004) 150814900-150898609 processed_transcript
ENST00000613030 (CD99L2-203) 150766339-150898816 protein_coding
ENSG00000228728 (RP11-316K19.3)
 ENST00000430535 (RP11-316K19.3-001) 150818753-150819246 processed_pseudogene
ENSG00000230153 (AF003626.1)
 ENST00000424539 (AF003626.1-002) 150917163-150920938 lincRNA
ENST00000437772 (AF003626.1-001) 150915813-150920938 lincRNA
CIL_0000UN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035776-ENSMUSG00000015217 CGP 10090 X:71420060-71560676
GeneTranscriptPositionBiotype
ENSMUSG00000015217 (Hmgb3)
high mobility group box 3 		ENSMUST00000015361 (Hmgb3-002) 71555941-71560676 protein_coding
ENSMUST00000072699 (Hmgb3-001) 71555918-71560676 protein_coding
ENSMUST00000088874 (Hmgb3-004) 71555990-71560676 protein_coding
ENSMUST00000114582 (Hmgb3-003) 71555928-71560676 protein_coding
ENSMUST00000123100 (Hmgb3-005) 71556946-71559273 protein_coding
ENSMUST00000132145 (Hmgb3-006) 71557783-71559773 retained_intron
ENSMUSG00000035776 (Cd99l2)
CD99 antigen-like 2 		ENSMUST00000037391 (Cd99l2-001) 71420060-71492849 protein_coding
ENSMUST00000080035 (Cd99l2-006) 71420060-71492645 protein_coding
ENSMUST00000114586 (Cd99l2-002) 71420060-71492849 protein_coding
ENSMUST00000114587 (Cd99l2-004) 71422624-71492849 protein_coding
ENSMUST00000128515 (Cd99l2-005) 71439335-71492649 retained_intron
ENSMUST00000148177 (Cd99l2-003) 71491899-71492605 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UN_0001ENSDARG00000056722ENSDART00000079235ENSDART00000079245ENSDARG00000056725ENSDART00000079262ENSDART00000123056ENSDART00000129924ENSDART00000135728CIL_0000UN_0002ENSG00000029993ENST00000325307ENST00000419110ENST00000430118ENST00000448905ENST00000455596ENSG00000102181ENST00000346693ENST00000355149ENST00000370377ENST00000418547ENST00000437787ENST00000466436ENST00000491877ENST00000613030ENSG00000228728ENST00000430535ENSG00000230153ENST00000424539ENST00000437772CIL_0000UN_0003ENSMUSG00000015217ENSMUST00000015361ENSMUST00000072699ENSMUST00000088874ENSMUST00000114582ENSMUST00000123100ENSMUST00000132145ENSMUSG00000035776ENSMUST00000037391ENSMUST00000080035ENSMUST00000114586ENSMUST00000114587ENSMUST00000128515ENSMUST00000148177
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000UN_0001ENSDARG00000056722ENSDART00000079235ENSDART00000079245ENSDARG00000056725ENSDART00000079262ENSDART00000129924CIL_0000UN_0002ENSG00000029993ENST00000325307ENST00000419110ENST00000430118ENST00000448905ENST00000455596ENSG00000102181ENST00000346693ENST00000355149ENST00000370377ENST00000437787ENST00000466436ENST00000613030ENSG00000228728ENST00000430535ENSG00000230153ENST00000424539ENST00000437772CIL_0000UN_0003ENSMUSG00000015217ENSMUST00000015361ENSMUST00000072699ENSMUST00000088874ENSMUST00000114582ENSMUST00000123100ENSMUST00000132145ENSMUSG00000035776ENSMUST00000037391ENSMUST00000080035ENSMUST00000114587
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056722 ENSDART00000079235 N/A N/A N/A 85.013±31.48 N/A N/A 11.140±3.22 5.280±1.24 0.403±0.00 N/A 12.203±0.00 N/A N/A N/A
ENSDART00000079245 N/A N/A N/A N/A N/A N/A N/A N/A 0.270±0.00 N/A 5.512±0.00 N/A N/A N/A
ENSDARG00000056725 ENSDART00000079262 N/A N/A N/A 90.254±22.43 N/A N/A 18.089±3.64 5.178±0.44 0.110±0.00 N/A 4.606±0.00 N/A N/A N/A
ENSDART00000123056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000129924 N/A N/A N/A 202.638±44.84 N/A N/A 78.055±0.00 20.521±0.00 N/A N/A 10.752±0.00 N/A N/A N/A
ENSDART00000135728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000029993 ENST00000325307 1.815±0.00 1.773±0.00 N/A 3.373±1.82 1.079±0.73 1.317±0.22 0.577±0.00 1.841±0.60 3.411±2.94 0.922±0.56 2.158±2.06 1.903±1.06 30.917±11.80 4.492±1.12
ENST00000419110 N/A N/A N/A 3.283±0.00 0.893±0.00 3.452±0.00 N/A 3.299±0.00 0.761±0.00 1.043±0.00 N/A N/A N/A 6.916±0.00
ENST00000430118 N/A N/A N/A N/A 4.327±0.00 N/A N/A N/A N/A N/A N/A 6.052±4.17 52.974±0.00 18.497±0.00
ENST00000448905 3.597±0.00 3.026±0.00 N/A 5.754±0.00 N/A N/A 1.153±0.00 N/A 10.267±0.00 2.096±0.00 N/A N/A N/A 8.005±0.00
ENST00000455596 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.245±0.00 3.805±0.00 5.237±0.88 97.916±34.82 14.348±0.00
ENSG00000102181 ENST00000346693 N/A N/A N/A N/A 0.594±0.00 N/A N/A N/A N/A 0.688±0.00 1.179±0.00 0.414±0.00 N/A N/A
ENST00000355149 3.794±0.00 3.597±0.00 N/A N/A N/A N/A N/A 5.708±0.00 3.057±0.00 N/A N/A 1.919±0.98 N/A 1.422±0.00
ENST00000370377 19.762±0.00 10.281±0.00 2.138±0.00 30.559±19.42 19.818±16.91 9.446±8.38 13.279±8.74 5.923±5.20 12.097±4.79 4.991±2.63 25.381±20.14 15.044±12.79 24.101±3.83 13.546±6.75
ENST00000418547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437787 N/A 2.180±0.00 N/A N/A N/A 7.354±0.00 N/A N/A 3.606±0.00 3.630±0.00 N/A N/A N/A N/A
ENST00000466436 N/A N/A N/A N/A N/A N/A N/A 2.151±0.00 N/A N/A N/A 1.802±0.00 N/A N/A
ENST00000491877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613030 N/A N/A N/A 10.573±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228728 ENST00000430535 N/A 0.028±0.00 N/A N/A N/A 0.621±0.00 N/A N/A 0.131±0.00 0.672±0.49 0.890±0.00 0.135±0.01 0.195±0.00 0.026±0.00
ENSG00000230153 ENST00000424539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A
ENST00000437772 N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015217 ENSMUST00000015361 N/A N/A N/A N/A 1.158±0.00 N/A N/A N/A N/A N/A 0.784±0.22 8.952±4.90 0.524±0.00 N/A
ENSMUST00000072699 N/A N/A 1.948±0.36 17.326±11.72 0.190±0.00 N/A 1.590±0.02 1.012±0.00 53.155±27.09 N/A 0.415±0.09 6.619±0.90 5.454±7.45 2.737±0.70
ENSMUST00000088874 1.230±0.38 N/A 1.339±0.00 15.373±0.00 1.238±0.51 3.184±1.33 N/A 1.754±0.51 0.604±0.16 1.357±0.21 N/A 7.269±1.80 0.304±0.00 1.519±0.21
ENSMUST00000114582 4.786±2.55 125.384±54.27 4.401±0.61 40.594±28.13 4.110±2.25 9.565±2.02 9.060±2.85 8.049±1.69 15.950±16.83 6.471±1.18 1.038±0.36 23.324±14.61 5.316±5.63 5.849±2.85
ENSMUST00000123100 N/A N/A N/A 4.340±0.00 0.684±0.00 N/A N/A N/A N/A N/A 0.667±0.00 N/A N/A N/A
ENSMUST00000132145 N/A N/A N/A 1.620±0.00 0.396±0.00 N/A N/A N/A N/A N/A 0.793±0.22 8.960±2.84 1.450±0.67 2.513±0.00
ENSMUSG00000035776 ENSMUST00000037391 13.104±2.05 12.149±2.35 10.711±0.24 12.019±6.31 7.362±0.42 4.065±0.74 5.301±0.42 8.248±1.29 3.700±0.98 6.048±0.43 5.391±0.99 9.216±1.79 3.093±1.51 1.205±0.14
ENSMUST00000080035 7.980±1.13 6.958±2.38 9.186±0.70 8.365±2.75 11.177±6.33 2.665±0.93 15.610±2.10 4.517±0.88 3.072±1.07 6.580±0.87 14.811±0.74 5.290±2.97 2.476±0.98 1.085±0.32
ENSMUST00000114586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.263±0.00 3.706±0.00
ENSMUST00000128515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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