C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006Y1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057494-ENSDARG00000029172 CGP 7955 14:20056685-20140596
GeneTranscriptPositionBiotype
ENSDARG00000057494 (ptcd3)
pentatricopeptide repeat domain 3 		ENSDART00000080138 (ptcd3-001) 20056685-20080757 protein_coding
ENSDART00000144136 (ptcd3-003) 20070780-20080302 retained_intron
ENSDART00000147565 (ptcd3-002) 20071709-20080528 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0006Y1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063884-ENSMUSG00000049553 CGP 10090 6:71880648-71979356
GeneTranscriptPositionBiotype
ENSMUSG00000049553 (Polr1a)
polymerase (RNA) I polypeptide A 		ENSMUST00000055296 (Polr1a-201) 71909053-71979356 protein_coding
ENSMUSG00000063884 (Ptcd3)
pentatricopeptide repeat domain 3 		ENSMUST00000082094 (Ptcd3-201) 71880648-71908762 protein_coding
ENSMUSG00000080465 (Gm22486)
predicted gene, 22486 		ENSMUST00000116815 (Gm22486-201) 71882557-71882693 snoRNA
ENSMUSG00000097133 (Gm26628)
predicted gene, 26628 		ENSMUST00000181028 (Gm26628-201) 71961145-71963775 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Y1_0001ENSDARG00000057494ENSDART00000080138ENSDART00000144136ENSDART00000147565CIL_0006Y1_0002ENSMUSG00000049553ENSMUST00000055296ENSMUSG00000063884ENSMUST00000082094ENSMUSG00000080465ENSMUST00000116815ENSMUSG00000097133ENSMUST00000181028
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Y1_0001ENSDARG00000057494ENSDART00000080138ENSDART00000147565CIL_0006Y1_0002ENSMUSG00000049553ENSMUST00000055296ENSMUSG00000063884ENSMUST00000082094ENSMUSG00000080465ENSMUST00000116815ENSMUSG00000097133ENSMUST00000181028
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000057494 ENSDART00000080138 N/A N/A N/A 6.244±4.25 N/A N/A 13.548±0.27 4.705±5.50 1.447±0.00 N/A 5.087±0.00 N/A N/A N/A
ENSDART00000144136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147565 N/A N/A N/A 2.576±0.41 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000049553 ENSMUST00000055296 7.083±1.87 9.853±3.91 4.441±0.25 5.222±1.12 5.576±1.56 3.816±0.49 7.243±0.35 4.080±0.60 4.595±1.76 3.983±1.38 6.364±0.90 13.621±4.02 6.899±4.04 6.300±0.78
ENSMUSG00000063884 ENSMUST00000082094 5.368±0.42 1.620±0.84 8.665±1.07 11.060±1.34 3.413±1.43 1.559±0.84 16.795±0.79 5.393±1.30 10.925±7.05 2.389±1.22 15.513±0.74 6.124±6.54 15.097±6.08 3.945±0.46
ENSMUSG00000080465 ENSMUST00000116815 489.914±0.00 N/A N/A 38.200±0.00 N/A N/A 1004.271±251.89 N/A 77.461±71.12 N/A 5.885±2.93 930.338±1559.21 17.843±14.75 5.027±0.00
ENSMUSG00000097133 ENSMUST00000181028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.930±0.30

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