C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000059746 plod1a 7955 + 8:50009104-50054848 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000083395 plod1a-001 50009104-50054848 protein_coding
  ENSDART00000144254 plod1a-003 50041007-50043069 processed_transcript
  ENSDART00000147159 plod1a-002 50009184-50014152 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000083395
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000083395 0.904±0.57 8.777±1.60 3.265±0.00 0.625±0.00 5.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022Y CIL_00022Y_0001 CGP 8:49988392-50054848
CIL_00022Z CIL_00022Z_0001 CGP 8:50009104-50107934

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005581 IEA collagen
GO:0005783 IEA endoplasmic reticulum
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031418 IEA L-ascorbic acid binding
GO:0033333 IMP fin development
GO:0033334 IMP fin morphogenesis
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000083444 PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 protein_coding Homo_sapiens
ENSMUSG00000019055 Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 protein_coding Mus_musculus

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