C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019055 Plod1 10090 - 4:147909753-147936767 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019199 Plod1-001 147909753-147936767 protein_coding
  ENSMUST00000105712 Plod1-007 147927617-147936725 protein_coding
  ENSMUST00000124041 Plod1-004 147922850-147923727 retained_intron
  ENSMUST00000124292 Plod1-006 147922463-147936742 retained_intron
  ENSMUST00000132075 Plod1-002 147931689-147936708 processed_transcript
  ENSMUST00000149129 Plod1-005 147915797-147921096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019199ENSMUST00000149129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019199 31.978±12.78 19.853±3.02 10.704±1.45 6.081±1.70 22.407±5.65 13.596±1.63 16.262±0.59 16.988±1.40 14.019±2.75 21.957±6.28 8.802±0.28 29.153±7.97 44.375±14.62 2.690±0.95
ENSMUST00000149129 N/A N/A N/A 4.921±0.00 9.503±0.00 N/A N/A N/A N/A N/A N/A 14.024±0.00 28.672±2.53 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0016020 IEA membrane
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059746 plod1a procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1a protein_coding Danio_rerio
ENSG00000083444 PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 protein_coding Homo_sapiens

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