C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000083444 PLOD1 9606 + 1:11934205-11975538 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000196061 PLOD1-001 11934753-11975537 protein_coding
  ENST00000358133 PLOD1-006 11934734-11954767 processed_transcript
  ENST00000429000 PLOD1-003 11934743-11957943 protein_coding
  ENST00000449038 PLOD1-005 11934694-11952691 protein_coding
  ENST00000465920 PLOD1-007 11954301-11958593 retained_intron
  ENST00000470133 PLOD1-010 11964702-11966414 retained_intron
  ENST00000481933 PLOD1-002 11971543-11975536 retained_intron
  ENST00000485046 PLOD1-004 11934205-11958620 processed_transcript
  ENST00000491536 PLOD1-009 11964688-11975538 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000196061ENST00000485046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000196061 31.536±0.00 37.984±0.00 3.929±0.00 14.524±0.00 22.041±17.89 29.421±25.90 11.338±9.39 21.533±17.66 26.711±25.35 14.434±12.65 12.947±0.00 46.344±28.81 102.826±22.32 21.722±13.33
ENST00000485046 N/A N/A 3.910±0.00 1.517±0.00 3.424±0.00 N/A 2.449±0.00 N/A 3.433±0.00 2.020±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0001 VISTA 1:11580820-12184055
CIL_00022Y CIL_00022Y_0002 CGP 1:11919591-11975538
CIL_00022Z CIL_00022Z_0002 CGP 1:11934205-12013514

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEP response to hypoxia
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006464 NAS cellular protein modification process
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0008544 TAS epidermis development
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0042803 TAS protein homodimerization activity
GO:0046947 TAS hydroxylysine biosynthetic process
GO:0055114 TAS:IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059746 plod1a procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1a protein_coding Danio_rerio
ENSMUSG00000019055 Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 protein_coding Mus_musculus

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