C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sharpin and rbck1 related
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000059871 shrprbck1r 7955 - 7:41451484-41474567 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000083719 shrprbck1r-201 41451484-41474567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000083719
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000083719 5.277±0.91 4.499±0.96 2.310±0.42 1.392±0.00 12.872±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y3 CIL_0006Y3_0001 CGP 7:41451484-41484742

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004842 IEA ubiquitin-protein ligase activity
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0046872 IEA metal ion binding
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0071600 IMP otic vesicle morphogenesis
GO:0071797 IEA LUBAC complex
GO:0097039 ISS protein linear polyubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000179526 SHARPIN SHANK-associated RH domain interactor protein_coding Homo_sapiens
ENSMUSG00000022552 Sharpin SHANK-associated RH domain interacting protein protein_coding Mus_musculus

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