C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sharpin and rbck1 related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000083719 shrprbck1r-201 ENSDARG00000059871 7955 - 7:41451484-41474567 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000083719
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000083719 5.277±0.91 4.499±0.96 2.310±0.42 1.392±0.00 12.872±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y3 CIL_0006Y3_0001 CGP 7:41451484-41484742

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004842 IEA ubiquitin-protein ligase activity
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0046872 IEA metal ion binding
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0071600 IMP otic vesicle morphogenesis
GO:0071797 IEA LUBAC complex
GO:0097039 ISS protein linear polyubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028964 Rbck1-002 protein_coding Mus_musculus 5e-34 150
ENSMUST00000109847 Rbck1-001 protein_coding Mus_musculus 5e-34 150
ENSMUST00000130165 Rbck1-005 retained_intron Mus_musculus 4e-34 150
ENSMUST00000145889 Rbck1-006 retained_intron Mus_musculus 9e-28 128

Loading