C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000060679 kdm1a 7955 - 17:28143502-28161099 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000085758 kdm1a-001 28143502-28161099 protein_coding
  ENSDART00000149226 kdm1a-002 28156467-28161085 protein_coding
  ENSDART00000149458 kdm1a-007 28158473-28160990 protein_coding
  ENSDART00000149543 kdm1a-003 28156816-28159611 protein_coding
  ENSDART00000149654 kdm1a-006 28158817-28161082 retained_intron
  ENSDART00000149767 kdm1a-005 28158843-28161085 retained_intron
  ENSDART00000149861 kdm1a-004 28154436-28156870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000085758
Transcript ID Brain Heart Kidney Muscle
ENSDART00000085758 11.818±6.18 4.587±1.76 6.061±1.38 3.543±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000208 CIL_000208_0001 CGP 17:28064873-28161099

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0016491 IEA oxidoreductase activity
GO:0034720 IEA histone H3-K4 demethylation
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process
GO:1900052 IGI regulation of retinoic acid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000004487 KDM1A lysine (K)-specific demethylase 1A protein_coding Homo_sapiens
ENSMUSG00000036940 Kdm1a lysine (K)-specific demethylase 1A protein_coding Mus_musculus

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