C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 220a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000060929 rnf220a 7955 + 2:32770235-32934615 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000086340 rnf220a-001 32907501-32934615 protein_coding
  ENSDART00000134651 rnf220a-006 32770235-32934069 protein_coding
  ENSDART00000136330 rnf220a-004 32907476-32918272 protein_coding
  ENSDART00000139295 rnf220a-005 32907478-32926397 protein_coding
  ENSDART00000143879 rnf220a-002 32907459-32918243 nonsense_mediated_decay
  ENSDART00000145588 rnf220a-003 32907457-32912539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000086340ENSDART00000134651ENSDART00000136330ENSDART00000139295
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000086340 13.171±1.81 9.873±0.00 10.733±0.00 1.480±0.00 1.063±0.00
ENSDART00000134651 6.636±0.52 N/A N/A N/A N/A
ENSDART00000136330 N/A 5.683±0.00 N/A N/A N/A
ENSDART00000139295 17.933±0.00 5.235±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PQ CIL_0001PQ_0001 CGP 2:32564477-32934615
CIL_0007OR CIL_0007OR_0003 UCNEbase 2:32702297-32845970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000187147 RNF220 ring finger protein 220 protein_coding Homo_sapiens
ENSMUSG00000028677 Rnf220 ring finger protein 220 protein_coding Mus_musculus

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