C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001PQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038789-ENSDARG00000060929 CGP 7955 2:32564477-32934615
GeneTranscriptPositionBiotype
ENSDARG00000038789 (tmem53)
transmembrane protein 53 		ENSDART00000056649 (tmem53-001) 32564477-32568496 protein_coding
ENSDARG00000060929 (rnf220a)
ring finger protein 220a 		ENSDART00000086340 (rnf220a-001) 32907501-32934615 protein_coding
ENSDART00000134651 (rnf220a-006) 32770235-32934069 protein_coding
ENSDART00000136330 (rnf220a-004) 32907476-32918272 protein_coding
ENSDART00000139295 (rnf220a-005) 32907478-32926397 protein_coding
ENSDART00000143879 (rnf220a-002) 32907459-32918243 nonsense_mediated_decay
ENSDART00000145588 (rnf220a-003) 32907457-32912539 protein_coding
ENSDARG00000096878 (si:dkey-154p10.5)
si:dkey-154p10.5 		ENSDART00000153931 (si:dkey-154p10.5-001) 32572091-32579874 lincRNA
ENSDARG00000097707 (si:ch211-285i13.1)
si:ch211-285i13.1 		ENSDART00000154101 (si:ch211-285i13.1-001) 32584462-32743920 lincRNA
ENSDART00000156961 (si:ch211-285i13.1-003) 32584585-32609880 lincRNA
ENSDART00000157368 (si:ch211-285i13.1-002) 32584522-32634481 lincRNA
ENSDARG00000097868 (si:ch211-285i13.2)
si:ch211-285i13.2 		ENSDART00000153813 (si:ch211-285i13.2-001) 32755960-32759539 lincRNA
CIL_0001PQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048772-ENSMUSG00000028677 CGP 10090 4:117251951-117497052
GeneTranscriptPositionBiotype
ENSMUSG00000028677 (Rnf220)
ring finger protein 220 		ENSMUST00000030439 (Rnf220-001) 117271463-117497052 protein_coding
ENSMUST00000094853 (Rnf220-002) 117271927-117375457 protein_coding
ENSMUST00000102690 (Rnf220-006) 117271464-117288772 protein_coding
ENSMUST00000123222 (Rnf220-007) 117490235-117495011 processed_transcript
ENSMUST00000128122 (Rnf220-009) 117277427-117289830 protein_coding
ENSMUST00000133971 (Rnf220-004) 117285379-117289111 processed_transcript
ENSMUST00000138435 (Rnf220-003) 117306058-117496949 processed_transcript
ENSMUST00000150148 (Rnf220-008) 117285889-117300028 processed_transcript
ENSMUST00000151829 (Rnf220-010) 117276519-117285474 processed_transcript
ENSMUST00000154974 (Rnf220-005) 117285092-117289442 processed_transcript
ENSMUSG00000048772 (Tmem53)
transmembrane protein 53 		ENSMUST00000062824 (Tmem53-001) 117251951-117268580 protein_coding
ENSMUST00000106433 (Tmem53-003) 117252340-117268580 protein_coding
ENSMUST00000106434 (Tmem53-002) 117252042-117268582 protein_coding
ENSMUST00000125943 (Tmem53-005) 117252040-117268514 protein_coding
ENSMUST00000145836 (Tmem53-004) 117265371-117268582 processed_transcript
ENSMUST00000154449 (Tmem53-006) 117252062-117267896 processed_transcript
ENSMUSG00000060268 (Gm1661)
predicted gene 1661 		ENSMUST00000077500 (Gm1661-001) 117215193-117251917 protein_coding
ENSMUST00000130660 (Gm1661-002) 117243513-117252125 processed_transcript
ENSMUST00000165128 (Gm1661-201) 117213333-117251917 protein_coding
ENSMUSG00000086876 (Gm12828)
predicted gene 12828 		ENSMUST00000136115 (Gm12828-001) 117445950-117455040 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001PQ_0001ENSDARG00000038789ENSDART00000056649ENSDARG00000060929ENSDART00000086340ENSDART00000134651ENSDART00000136330ENSDART00000139295ENSDART00000143879ENSDART00000145588ENSDARG00000096878ENSDART00000153931ENSDARG00000097707ENSDART00000154101ENSDART00000156961ENSDART00000157368ENSDARG00000097868ENSDART00000153813CIL_0001PQ_0002ENSMUSG00000028677ENSMUST00000030439ENSMUST00000094853ENSMUST00000102690ENSMUST00000123222ENSMUST00000128122ENSMUST00000133971ENSMUST00000138435ENSMUST00000150148ENSMUST00000151829ENSMUST00000154974ENSMUSG00000048772ENSMUST00000062824ENSMUST00000106433ENSMUST00000106434ENSMUST00000125943ENSMUST00000145836ENSMUST00000154449ENSMUSG00000060268ENSMUST00000077500ENSMUST00000130660ENSMUST00000165128ENSMUSG00000086876ENSMUST00000136115
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001PQ_0001ENSDARG00000038789ENSDART00000056649ENSDARG00000060929ENSDART00000086340ENSDART00000134651ENSDART00000136330ENSDART00000139295ENSDARG00000096878ENSDART00000153931ENSDARG00000097707ENSDART00000154101ENSDART00000157368ENSDARG00000097868ENSDART00000153813CIL_0001PQ_0002ENSMUSG00000028677ENSMUST00000030439ENSMUST00000094853ENSMUST00000102690ENSMUST00000133971ENSMUST00000154974ENSMUSG00000048772ENSMUST00000062824ENSMUST00000106433ENSMUST00000106434ENSMUST00000125943ENSMUST00000145836ENSMUSG00000060268ENSMUST00000077500ENSMUST00000165128ENSMUSG00000086876ENSMUST00000136115
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038789 ENSDART00000056649 N/A N/A N/A 5.411±2.57 N/A N/A 2.949±0.59 12.883±4.46 0.792±0.00 N/A 1.280±0.00 N/A N/A N/A
ENSDARG00000060929 ENSDART00000086340 N/A N/A N/A 13.171±1.81 N/A N/A 9.873±0.00 10.733±0.00 1.480±0.00 N/A 1.063±0.00 N/A N/A N/A
ENSDART00000134651 N/A N/A N/A 6.636±0.52 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136330 N/A N/A N/A N/A N/A N/A 5.683±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139295 N/A N/A N/A 17.933±0.00 N/A N/A 5.235±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000096878 ENSDART00000153931 N/A N/A N/A 0.055±0.00 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000097707 ENSDART00000154101 N/A N/A N/A 0.097±0.04 N/A N/A N/A 0.071±0.03 N/A N/A N/A N/A N/A N/A
ENSDART00000156961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000157368 N/A N/A N/A N/A N/A N/A N/A 0.873±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000097868 ENSDART00000153813 N/A N/A N/A 0.437±0.23 N/A N/A N/A N/A N/A N/A 0.223±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028677 ENSMUST00000030439 2.957±0.05 N/A N/A 12.607±7.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.377±0.00
ENSMUST00000094853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.230±8.61
ENSMUST00000102690 14.289±0.12 58.340±8.49 13.026±0.00 16.140±3.98 19.215±8.98 20.052±5.66 6.582±2.56 14.149±1.25 7.854±0.92 18.969±4.02 5.742±1.28 32.932±15.33 19.175±7.63 26.680±10.72
ENSMUST00000123222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 103.629±0.00 108.015±1.87 185.004±0.00
ENSMUST00000138435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.507±0.00
ENSMUSG00000048772 ENSMUST00000062824 11.835±4.81 17.958±5.60 5.818±0.91 1.893±0.68 6.646±1.59 4.237±0.87 13.621±3.12 21.302±3.81 14.756±10.88 3.364±0.75 1.380±0.29 7.025±2.89 2.192±0.92 290.090±135.59
ENSMUST00000106433 3.736±0.86 42.780±12.99 N/A N/A 18.686±3.36 5.429±2.05 N/A 7.188±1.08 18.440±5.15 3.479±1.16 N/A 12.753±3.53 N/A N/A
ENSMUST00000106434 4.193±1.07 13.543±0.00 N/A N/A 6.913±3.15 1.862±0.29 4.877±0.45 9.472±3.22 6.418±6.88 3.521±1.39 N/A 6.432±3.50 1.012±0.43 80.049±4.22
ENSMUST00000125943 N/A 34.820±5.27 N/A N/A 6.028±1.40 1.633±0.00 4.157±0.91 9.864±2.65 N/A N/A N/A 7.122±1.50 N/A 15.778±0.00
ENSMUST00000145836 N/A N/A N/A 0.236±0.10 N/A N/A N/A N/A 0.214±0.00 N/A 0.092±0.01 1.547±0.00 0.389±0.00 N/A
ENSMUST00000154449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000060268 ENSMUST00000077500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.939±0.00 0.078±0.00 N/A
ENSMUST00000130660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165128 N/A N/A N/A 0.332±0.13 N/A N/A N/A N/A N/A 2.300±0.21 N/A 2.262±0.76 N/A 64.445±22.75
ENSMUSG00000086876 ENSMUST00000136115 N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A 0.547±0.15 N/A N/A

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