C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 220
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187147 RNF220 9606 + 1:44405194-44651724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335497 RNF220-014 44631732-44649769 protein_coding
  ENST00000355387 RNF220-001 44405194-44651723 protein_coding
  ENST00000361799 RNF220-002 44405288-44651723 protein_coding
  ENST00000372247 RNF220-201 44405288-44651724 protein_coding
  ENST00000440132 RNF220-013 44631732-44649957 protein_coding
  ENST00000443020 RNF220-202 44405288-44651724 protein_coding
  ENST00000453863 RNF220-010 44626326-44636152 protein_coding
  ENST00000470498 RNF220-009 44412698-44419872 processed_transcript
  ENST00000471494 RNF220-012 44631975-44645081 processed_transcript
  ENST00000474064 RNF220-003 44631968-44651723 processed_transcript
  ENST00000474394 RNF220-017 44638296-44650890 processed_transcript
  ENST00000474956 RNF220-005 44648308-44651723 processed_transcript
  ENST00000475378 RNF220-015 44632255-44650808 processed_transcript
  ENST00000480686 RNF220-004 44643132-44651723 processed_transcript
  ENST00000484745 RNF220-006 44632645-44651723 processed_transcript
  ENST00000487332 RNF220-007 44408702-44412121 processed_transcript
  ENST00000488865 RNF220-016 44631984-44636495 nonsense_mediated_decay
  ENST00000496262 RNF220-008 44614265-44627057 processed_transcript
  ENST00000497469 RNF220-011 44632235-44645081 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372247ENST00000440132ENST00000443020ENST00000453863ENST00000471494ENST00000474064ENST00000474956ENST00000475378ENST00000480686ENST00000484745ENST00000497469
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372247 N/A 12.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440132 N/A N/A N/A N/A N/A 0.880±0.00 N/A N/A N/A 26.611±0.00 N/A N/A
ENST00000443020 N/A 6.309±3.32 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453863 N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.552±0.00 34.959±0.00 49.763±0.00
ENST00000471494 N/A N/A 0.879±0.00 N/A N/A N/A N/A 23.654±0.00 N/A N/A N/A N/A
ENST00000474064 N/A N/A N/A N/A N/A 9.597±0.00 N/A N/A N/A N/A N/A N/A
ENST00000474956 N/A N/A N/A N/A 0.227±0.00 0.413±0.00 N/A N/A N/A 0.949±0.00 N/A N/A
ENST00000475378 1.121±0.00 34.297±0.00 N/A N/A N/A N/A N/A N/A 1.624±0.00 N/A N/A N/A
ENST00000480686 N/A N/A N/A N/A N/A N/A N/A 0.339±0.00 N/A N/A N/A N/A
ENST00000484745 N/A N/A N/A 2.411±0.00 N/A 18.404±0.00 N/A 0.904±0.00 N/A 19.653±0.00 26.392±0.00 N/A
ENST00000497469 N/A N/A N/A N/A N/A N/A 2.523±0.00 N/A 1.639±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477
CIL_0007OR CIL_0007OR_0001 UCNEbase 1:44250002-44569572

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060929 rnf220a ring finger protein 220a protein_coding Danio_rerio
ENSDARG00000075183 rnf220b ring finger protein 220b protein_coding Danio_rerio
ENSMUSG00000028677 Rnf220 ring finger protein 220 protein_coding Mus_musculus

Loading