C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 220
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028677 Rnf220 10090 - 4:117271463-117497052 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030439 Rnf220-001 117271463-117497052 protein_coding
  ENSMUST00000094853 Rnf220-002 117271927-117375457 protein_coding
  ENSMUST00000102690 Rnf220-006 117271464-117288772 protein_coding
  ENSMUST00000123222 Rnf220-007 117490235-117495011 processed_transcript
  ENSMUST00000128122 Rnf220-009 117277427-117289830 protein_coding
  ENSMUST00000133971 Rnf220-004 117285379-117289111 processed_transcript
  ENSMUST00000138435 Rnf220-003 117306058-117496949 processed_transcript
  ENSMUST00000150148 Rnf220-008 117285889-117300028 processed_transcript
  ENSMUST00000151829 Rnf220-010 117276519-117285474 processed_transcript
  ENSMUST00000154974 Rnf220-005 117285092-117289442 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030439ENSMUST00000094853ENSMUST00000102690ENSMUST00000133971ENSMUST00000154974
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030439 2.957±0.05 N/A N/A 12.607±7.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.377±0.00
ENSMUST00000094853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.230±8.61
ENSMUST00000102690 14.289±0.12 58.340±8.49 13.026±0.00 16.140±3.98 19.215±8.98 20.052±5.66 6.582±2.56 14.149±1.25 7.854±0.92 18.969±4.02 5.742±1.28 32.932±15.33 19.175±7.63 26.680±10.72
ENSMUST00000133971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 103.629±0.00 108.015±1.87 185.004±0.00
ENSMUST00000154974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.507±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060929 rnf220a ring finger protein 220a protein_coding Danio_rerio
ENSDARG00000075183 rnf220b ring finger protein 220b protein_coding Danio_rerio
ENSG00000187147 RNF220 ring finger protein 220 protein_coding Homo_sapiens

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