C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, serotonin), member 4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000061165 slc6a4a 7955 - 15:27957909-27967386 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000086902 slc6a4a-001 27957909-27967386 protein_coding
  ENSDART00000141436 slc6a4a-002 27965743-27966617 retained_intron
  ENSDART00000152317 slc6a4a-003 27965608-27967125 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000086902
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000086902 2.351±0.07 89.513±0.00 6.413±0.00 0.700±0.00 0.224±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GG CIL_0004GG_0001 CGP 15:27957909-28134396

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0006810 IEA transport
GO:0006836 IEA neurotransmitter transport
GO:0006837 IDA serotonin transport
GO:0008144 IDA drug binding
GO:0015222 IDA serotonin transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034220 IDA ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000108576 SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 protein_coding Homo_sapiens
ENSMUSG00000020838 Slc6a4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 protein_coding Mus_musculus

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