C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SKI family transcriptional corepressor 1b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000062448 skor1b 7955 + 18:19755322-19762740 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000090334 skor1b-201 19755322-19762740 protein_coding
  ENSDART00000138103 skor1b-001 19756498-19762220 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000090334ENSDART00000138103
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000090334 0.914±0.37 0.271±0.01 0.075±0.00 N/A 0.111±0.00
ENSDART00000138103 0.937±0.00 0.020±0.00 0.409±0.21 0.017±0.00 0.070±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L4 CIL_0004L4_0001 CGP 18:19755322-19806075

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0005737 IBA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0030512 IBA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0046332 IEA SMAD binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000188779 SKOR1 SKI family transcriptional corepressor 1 protein_coding Homo_sapiens
ENSMUSG00000022245 Skor1 SKI family transcriptional corepressor 1 protein_coding Mus_musculus

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