C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SKI family transcriptional corepressor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022245 Skor1 10090 - 9:63138170-63148961 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055281 Skor1-002 63138176-63146980 protein_coding
  ENSMUST00000116613 Skor1-003 63138170-63148961 protein_coding
  ENSMUST00000119146 Skor1-001 63138170-63147011 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055281ENSMUST00000116613ENSMUST00000119146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055281 N/A 0.009±0.00 N/A N/A N/A 0.008±0.00 N/A N/A 0.001±0.00 N/A N/A 0.013±0.01 N/A N/A
ENSMUST00000116613 0.025±0.02 N/A 0.035±0.00 2.354±2.81 0.018±0.01 N/A 0.019±0.00 0.012±0.00 0.011±0.01 0.007±0.00 0.038±0.02 0.020±0.01 0.043±0.03 0.637±0.15
ENSMUST00000119146 0.002±0.00 0.034±0.02 N/A 2.243±1.32 0.046±0.04 0.030±0.02 N/A 0.009±0.00 0.008±0.01 0.014±0.01 N/A 0.035±0.02 0.037±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FO CIL_0008FO_0002 VISTA 9:62808235-63410238
CIL_00098T CIL_00098T_0002 VISTA 9:62831587-63433435
CIL_0008DX CIL_0008DX_0002 VISTA 9:62876076-63477276
CIL_00050U CIL_00050U_0002 CGP 9:62880077-63148961
CIL_0004FE CIL_0004FE_0002 CGP 9:63138170-63377902

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IBA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0030425 IEA dendrite
GO:0030512 IBA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 IEA negative regulation of BMP signaling pathway
GO:0043025 IEA neuronal cell body
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046332 IBA SMAD binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062448 skor1b SKI family transcriptional corepressor 1b protein_coding Danio_rerio
ENSDARG00000069030 skor1a SKI family transcriptional corepressor 1a protein_coding Danio_rerio
ENSG00000188779 SKOR1 SKI family transcriptional corepressor 1 protein_coding Homo_sapiens

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