C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SKI family transcriptional corepressor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188779 SKOR1 9606 + 15:67819704-67834561 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341418 SKOR1-001 67819704-67834561 protein_coding
  ENST00000380035 SKOR1-003 67825545-67834555 protein_coding
  ENST00000554054 SKOR1-004 67825516-67834555 protein_coding
  ENST00000554240 SKOR1-002 67823557-67834538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLungOvaryPlacentaENST00000341418ENST00000554240
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Lung Ovary Placenta
ENST00000341418 0.035±0.00 N/A N/A N/A 0.117±0.00 0.010±0.00 N/A N/A 0.108±0.00 N/A
ENST00000554240 N/A 0.195±0.00 0.099±0.00 0.574±0.00 0.038±0.00 0.105±0.00 0.022±0.00 0.038±0.02 0.207±0.00 0.116±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DX CIL_0008DX_0001 VISTA 15:67486945-68088375
CIL_00098T CIL_00098T_0001 VISTA 15:67539824-68142788
CIL_0008FO CIL_0008FO_0001 VISTA 15:67583922-68185582
CIL_0004L4 CIL_0004L4_0002 CGP 15:67819704-68198603

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IEA transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 NAS:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IBA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0030425 IDA dendrite
GO:0030512 IBA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 IDA negative regulation of BMP signaling pathway
GO:0043025 IDA neuronal cell body
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046332 IPI:IEA SMAD binding
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062448 skor1b SKI family transcriptional corepressor 1b protein_coding Danio_rerio
ENSDARG00000069030 skor1a SKI family transcriptional corepressor 1a protein_coding Danio_rerio
ENSMUSG00000022245 Skor1 SKI family transcriptional corepressor 1 protein_coding Mus_musculus

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