C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox transcription factor 1, beta b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000068365 lmx1bb 7955 - 8:34108286-34229955 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000076420 lmx1bb-001 34108717-34229955 protein_coding
  ENSDART00000127460 lmx1bb-201 34108286-34229426 protein_coding
  ENSDART00000147131 lmx1bb-002 34125467-34126634 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000076420ENSDART00000127460
Transcript ID Brain Heart Kidney Muscle
ENSDART00000076420 0.573±0.26 0.055±0.00 N/A 0.247±0.00
ENSDART00000127460 1.198±0.43 0.138±0.00 2.129±1.22 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XW CIL_0002XW_0001 CGP 8:34108286-34417006

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002072 IGI optic cup morphogenesis involved in camera-type eye development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0021592 IGI fourth ventricle development
GO:0030917 IGI midbrain-hindbrain boundary development
GO:0032474 IMP otolith morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0048752 IMP semicircular canal morphogenesis
GO:0060041 IGI retina development in camera-type eye
GO:0060117 IMP auditory receptor cell development
GO:0061386 IGI closure of optic fissure

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000136944 LMX1B LIM homeobox transcription factor 1, beta protein_coding Homo_sapiens
ENSMUSG00000038765 Lmx1b LIM homeobox transcription factor 1 beta protein_coding Mus_musculus

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