C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002XW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068365-ENSDARG00000079478 CGP 7955 8:34108286-34417006
GeneTranscriptPositionBiotype
ENSDARG00000068365 (lmx1bb)
LIM homeobox transcription factor 1, beta b 		ENSDART00000076420 (lmx1bb-001) 34108717-34229955 protein_coding
ENSDART00000127460 (lmx1bb-201) 34108286-34229426 protein_coding
ENSDART00000147131 (lmx1bb-002) 34125467-34126634 retained_intron
ENSDARG00000079478 (mvb12bb)
multivesicular body subunit 12Bb 		ENSDART00000109600 (mvb12bb-201) 34269261-34408468 protein_coding
ENSDART00000138921 (mvb12bb-001) 34268719-34417006 protein_coding
ENSDARG00000094498 (si:ch211-81g2.1)
si:ch211-81g2.1 		ENSDART00000133806 (si:ch211-81g2.1-001) 34230829-34248136 processed_transcript
CIL_0002XW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038765-ENSMUSG00000038740 CGP 10090 2:33560965-33887946
GeneTranscriptPositionBiotype
ENSMUSG00000038740 (Mvb12b)
multivesicular body subunit 12B 		ENSMUST00000041555 (Mvb12b-001) 33729953-33887946 protein_coding
ENSMUST00000146892 (Mvb12b-003) 33873614-33887482 processed_transcript
ENSMUST00000148660 (Mvb12b-002) 33825048-33886845 protein_coding
ENSMUSG00000038765 (Lmx1b)
LIM homeobox transcription factor 1 beta 		ENSMUST00000041730 (Lmx1b-001) 33560965-33640511 protein_coding
ENSMUST00000137559 (Lmx1b-002) 33567156-33632283 processed_transcript
ENSMUST00000176067 (Lmx1b-003) 33564325-33640480 protein_coding
ENSMUSG00000052951 (C130021I20Rik)
Riken cDNA C130021I20 gene 		ENSMUST00000147294 (C130021I20Rik-001) 33641331-33646354 antisense
ENSMUST00000152118 (C130021I20Rik-002) 33641193-33642593 antisense
ENSMUSG00000081244 (Gm13529)
predicted gene 13529 		ENSMUST00000121118 (Gm13529-001) 33652389-33652798 processed_pseudogene
ENSMUSG00000085463 (9430024E24Rik)
RIKEN cDNA 9430024E24 gene 		ENSMUST00000130532 (9430024E24Rik-001) 33716361-33718899 lincRNA
ENSMUSG00000086484 (Nron)
non-protein coding RNA, repressor of NFAT 		ENSMUST00000140412 (Nron-003) 33805859-33811438 antisense
ENSMUST00000151761 (Nron-002) 33805828-33812455 antisense
ENSMUST00000156297 (Nron-001) 33805816-33813591 antisense
ENSMUSG00000089596 (Nron)
non-protein coding RNA, repressor of NFAT 		ENSMUST00000158971 (Nron-201) 33812957-33813326 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XW_0001ENSDARG00000068365ENSDART00000076420ENSDART00000127460ENSDART00000147131ENSDARG00000079478ENSDART00000109600ENSDART00000138921ENSDARG00000094498ENSDART00000133806CIL_0002XW_0002ENSMUSG00000038740ENSMUST00000041555ENSMUST00000146892ENSMUST00000148660ENSMUSG00000038765ENSMUST00000041730ENSMUST00000137559ENSMUST00000176067ENSMUSG00000052951ENSMUST00000147294ENSMUST00000152118ENSMUSG00000081244ENSMUST00000121118ENSMUSG00000085463ENSMUST00000130532ENSMUSG00000086484ENSMUST00000140412ENSMUST00000151761ENSMUST00000156297ENSMUSG00000089596ENSMUST00000158971
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XW_0001ENSDARG00000068365ENSDART00000076420ENSDART00000127460ENSDARG00000079478ENSDART00000109600ENSDART00000138921ENSDARG00000094498ENSDART00000133806CIL_0002XW_0002ENSMUSG00000038740ENSMUST00000041555ENSMUST00000146892ENSMUST00000148660ENSMUSG00000038765ENSMUST00000041730ENSMUST00000137559ENSMUST00000176067ENSMUSG00000052951ENSMUST00000147294ENSMUST00000152118ENSMUSG00000081244ENSMUST00000121118ENSMUSG00000085463ENSMUST00000130532ENSMUSG00000086484ENSMUST00000140412ENSMUST00000151761ENSMUST00000156297ENSMUSG00000089596ENSMUST00000158971
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000068365 ENSDART00000076420 N/A N/A N/A 0.573±0.26 N/A N/A 0.055±0.00 N/A N/A N/A 0.247±0.00 N/A N/A N/A
ENSDART00000127460 N/A N/A N/A 1.198±0.43 N/A N/A 0.138±0.00 2.129±1.22 N/A N/A N/A N/A N/A N/A
ENSDART00000147131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000079478 ENSDART00000109600 N/A N/A N/A 0.131±0.04 N/A N/A 0.237±0.00 2.043±0.00 0.415±0.00 N/A N/A N/A N/A N/A
ENSDART00000138921 N/A N/A N/A 0.100±0.00 N/A N/A 0.096±0.05 1.032±0.19 0.399±0.00 N/A 0.057±0.00 N/A N/A N/A
ENSDARG00000094498 ENSDART00000133806 N/A N/A N/A 0.118±0.04 N/A N/A N/A 2.954±1.85 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038740 ENSMUST00000041555 N/A 1.707±0.00 1.456±0.02 10.392±3.51 1.301±0.00 N/A 0.832±0.00 1.283±0.13 0.539±0.23 N/A 2.317±0.79 2.525±0.75 1.104±0.13 0.463±0.21
ENSMUST00000146892 N/A 18.333±4.19 N/A N/A 9.686±0.00 N/A N/A N/A 0.633±0.00 N/A N/A N/A N/A N/A
ENSMUST00000148660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.481±0.00
ENSMUSG00000038765 ENSMUST00000041730 0.006±0.00 0.010±0.00 0.035±0.00 1.795±2.23 2.981±1.38 0.035±0.02 0.020±0.00 0.403±0.19 0.017±0.02 0.052±0.00 0.040±0.01 0.018±0.01 0.223±0.27 0.048±0.02
ENSMUST00000137559 N/A N/A N/A N/A N/A 0.227±0.00 N/A N/A 0.042±0.00 N/A N/A N/A 0.636±0.00 N/A
ENSMUST00000176067 N/A 0.020±0.00 N/A 0.155±0.00 N/A 0.075±0.02 0.086±0.00 N/A 0.014±0.01 N/A 0.053±0.00 N/A 0.203±0.13 N/A
ENSMUSG00000052951 ENSMUST00000147294 0.013±0.00 0.032±0.02 0.034±0.00 2.666±2.81 6.188±2.29 0.173±0.09 0.030±0.01 0.557±0.26 0.012±0.02 0.190±0.02 0.030±0.02 0.019±0.00 0.129±0.07 0.008±0.00
ENSMUST00000152118 N/A N/A N/A N/A N/A 0.294±0.09 0.055±0.00 0.536±0.00 N/A 0.228±0.08 0.129±0.00 N/A N/A N/A
ENSMUSG00000081244 ENSMUST00000121118 0.175±0.00 N/A 0.100±0.03 0.053±0.01 N/A N/A N/A 0.122±0.00 0.119±0.08 N/A N/A 0.376±0.00 N/A 0.147±0.01
ENSMUSG00000085463 ENSMUST00000130532 N/A N/A N/A N/A N/A 0.253±0.09 N/A N/A 0.020±0.01 N/A 0.065±0.00 N/A 0.017±0.00 0.084±0.02
ENSMUSG00000086484 ENSMUST00000140412 N/A 0.135±0.00 N/A 0.125±0.00 0.178±0.08 0.183±0.03 0.050±0.00 N/A 0.041±0.02 0.160±0.04 N/A 0.174±0.03 0.045±0.00 0.032±0.00
ENSMUST00000151761 0.045±0.03 0.105±0.05 N/A 0.087±0.05 N/A 0.026±0.00 0.034±0.00 0.027±0.01 0.033±0.02 0.041±0.01 N/A 0.066±0.04 N/A 0.013±0.00
ENSMUST00000156297 0.039±0.00 N/A 0.011±0.00 0.058±0.00 0.024±0.01 0.038±0.00 N/A 0.022±0.01 0.015±0.01 0.047±0.01 N/A 0.009±0.00 N/A 0.016±0.01
ENSMUSG00000089596 ENSMUST00000158971 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A 0.123±0.00 N/A N/A

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