C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vitamin D receptor b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000070721 vdrb 7955 - 6:38885597-38937313 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000104116 vdrb-201 38885926-38908301 protein_coding
  ENSDART00000150885 vdrb-001 38885597-38937313 protein_coding
  ENSDART00000151750 vdrb-002 38907880-38935997 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000104116ENSDART00000150885
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000104116 N/A N/A N/A 0.071±0.00 0.458±0.00
ENSDART00000150885 0.883±0.78 0.863±0.00 1.470±0.00 0.255±0.00 0.550±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DI CIL_0003DI_0001 CGP 6:38835911-38937313

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0008434 IEA calcitriol receptor activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000111424 VDR vitamin D (1,25- dihydroxyvitamin D3) receptor protein_coding Homo_sapiens
ENSMUSG00000022479 Vdr vitamin D receptor protein_coding Mus_musculus

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