C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000073850-ENSDARG00000070721 CGP 7955 6:38835911-38937313
GeneTranscriptPositionBiotype
ENSDARG00000070721 (vdrb)
vitamin D receptor b 		ENSDART00000104116 (vdrb-201) 38885926-38908301 protein_coding
ENSDART00000150885 (vdrb-001) 38885597-38937313 protein_coding
ENSDART00000151750 (vdrb-002) 38907880-38935997 protein_coding
ENSDARG00000073850 (HDAC7)
histone deacetylase 7 		ENSDART00000099842 (HDAC7-201) 38836472-38856383 protein_coding
ENSDART00000154151 (HDAC7-001) 38835911-38861590 protein_coding
ENSDART00000156667 (HDAC7-002) 38837615-38838877 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0003DI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000061273-ENSG00000111424 CGP 9606 12:47782722-47943048
GeneTranscriptPositionBiotype
ENSG00000061273 (HDAC7)
histone deacetylase 7 		ENST00000080059 (HDAC7-001) 47782722-47819785 protein_coding
ENST00000354334 (HDAC7-002) 47782722-47819866 protein_coding
ENST00000380610 (HDAC7-029) 47783721-47802512 protein_coding
ENST00000417107 (HDAC7-009) 47798560-47819980 protein_coding
ENST00000417902 (HDAC7-018) 47798118-47819961 protein_coding
ENST00000421231 (HDAC7-016) 47797430-47813051 protein_coding
ENST00000422254 (HDAC7-021) 47797107-47813051 protein_coding
ENST00000425451 (HDAC7-017) 47795377-47819883 nonsense_mediated_decay
ENST00000427332 (HDAC7-013) 47783841-47820612 protein_coding
ENST00000430670 (HDAC7-019) 47795667-47819875 protein_coding
ENST00000433685 (HDAC7-011) 47798188-47820573 protein_coding
ENST00000434070 (HDAC7-014) 47797384-47833132 protein_coding
ENST00000440293 (HDAC7-020) 47797118-47819886 protein_coding
ENST00000445237 (HDAC7-015) 47798640-47813484 protein_coding
ENST00000447463 (HDAC7-012) 47797384-47820601 protein_coding
ENST00000450805 (HDAC7-010) 47798114-47819262 protein_coding
ENST00000459625 (HDAC7-007) 47782726-47793498 retained_intron
ENST00000463732 (HDAC7-023) 47794836-47795850 retained_intron
ENST00000470668 (HDAC7-005) 47782726-47798189 retained_intron
ENST00000471235 (HDAC7-008) 47785451-47788169 retained_intron
ENST00000477203 (HDAC7-030) 47783674-47799140 nonsense_mediated_decay
ENST00000477937 (HDAC7-026) 47790377-47793386 processed_transcript
ENST00000485796 (HDAC7-022) 47794869-47797492 nonsense_mediated_decay
ENST00000488927 (HDAC7-027) 47788096-47792000 nonsense_mediated_decay
ENST00000491464 (HDAC7-024) 47794807-47795604 retained_intron
ENST00000547259 (HDAC7-004) 47783800-47786667 nonsense_mediated_decay
ENST00000548080 (HDAC7-031) 47783516-47792004 protein_coding
ENST00000548938 (HDAC7-003) 47782726-47793542 nonsense_mediated_decay
ENST00000549883 (HDAC7-033) 47783638-47785381 processed_transcript
ENST00000552960 (HDAC7-028) 47783651-47819886 protein_coding
ENSG00000111424 (VDR)
vitamin D (1,25- dihydroxyvitamin D3) receptor 		ENST00000229022 (VDR-201) 47841539-47905031 protein_coding
ENST00000395324 (VDR-001) 47841537-47943048 protein_coding
ENST00000546653 (VDR-007) 47855634-47905016 protein_coding
ENST00000547065 (VDR-003) 47844470-47905022 nonsense_mediated_decay
ENST00000548664 (VDR-006) 47857661-47905040 protein_coding
ENST00000549336 (VDR-004) 47841537-47905022 protein_coding
ENST00000550314 (VDR-008) 47857648-47882935 protein_coding
ENST00000550325 (VDR-002) 47842628-47905003 protein_coding
ENSG00000211584 (SLC48A1)
solute carrier family 48 (heme transporter), member 1 		ENST00000442218 (SLC48A1-001) 47773208-47782753 protein_coding
ENST00000442892 (SLC48A1-002) 47771587-47782751 protein_coding
ENST00000461620 (SLC48A1-004) 47778355-47779193 processed_transcript
ENST00000476104 (SLC48A1-005) 47778366-47779192 processed_transcript
ENST00000547002 (SLC48A1-007) 47758578-47780307 protein_coding
ENST00000548498 (SLC48A1-008) 47753916-47779171 protein_coding
ENST00000549243 (SLC48A1-009) 47758994-47779111 protein_coding
ENST00000551301 (SLC48A1-006) 47773215-47780824 nonsense_mediated_decay
ENST00000552003 (SLC48A1-010) 47753930-47756485 retained_intron
ENSG00000268069 (RP5-1057I20.4)
 ENST00000599515 (RP5-1057I20.4-001) 47784923-47786002 antisense
ENSG00000274737 (RP5-1057I20.6)
 ENST00000614749 (RP5-1057I20.6-001) 47817451-47817966 sense_intronic
ENSG00000278385 (RP11-89H19.2)
 ENST00000622535 (RP11-89H19.2-001) 47905122-47906865 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003DI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022475-ENSMUSG00000022479 CGP 10090 15:97792664-97910630
GeneTranscriptPositionBiotype
ENSMUSG00000022475 (Hdac7)
histone deacetylase 7 		ENSMUST00000079838 (Hdac7-006) 97792664-97831494 protein_coding
ENSMUST00000088402 (Hdac7-005) 97792681-97831767 protein_coding
ENSMUST00000116408 (Hdac7-001) 97792666-97844502 protein_coding
ENSMUST00000116409 (Hdac7-002) 97792690-97844302 protein_coding
ENSMUST00000118294 (Hdac7-007) 97792709-97831494 protein_coding
ENSMUST00000119670 (Hdac7-003) 97792688-97844269 protein_coding
ENSMUST00000120683 (Hdac7-004) 97792709-97844164 protein_coding
ENSMUST00000121514 (Hdac7-008) 97792688-97814863 protein_coding
ENSMUST00000134258 (Hdac7-011) 97801282-97807984 protein_coding
ENSMUST00000135651 (Hdac7-012) 97799609-97807633 protein_coding
ENSMUST00000151334 (Hdac7-010) 97792687-97794445 retained_intron
ENSMUST00000156045 (Hdac7-009) 97797799-97831469 nonsense_mediated_decay
ENSMUSG00000022479 (Vdr)
vitamin D receptor 		ENSMUST00000023119 (Vdr-001) 97854425-97908310 protein_coding
ENSMUST00000126568 (Vdr-002) 97876776-97896813 protein_coding
ENSMUST00000139656 (Vdr-003) 97857537-97859698 retained_intron
ENSMUST00000173104 (Vdr-006) 97876848-97910630 protein_coding
ENSMUST00000173611 (Vdr-005) 97884889-97909562 protein_coding
ENSMUST00000174633 (Vdr-004) 97884877-97910630 protein_coding
ENSMUSG00000081534 (Slc48a1)
solute carrier family 48 (heme transporter), member 1 		ENSMUST00000117892 (Slc48a1-001) 97784355-97792692 protein_coding
ENSMUST00000135073 (Slc48a1-002) 97784428-97789963 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DI_0001ENSDARG00000070721ENSDART00000104116ENSDART00000150885ENSDART00000151750ENSDARG00000073850ENSDART00000099842ENSDART00000154151ENSDART00000156667CIL_0003DI_0002ENSG00000061273ENST00000080059ENST00000354334ENST00000380610ENST00000417107ENST00000417902ENST00000421231ENST00000422254ENST00000425451ENST00000427332ENST00000430670ENST00000433685ENST00000434070ENST00000440293ENST00000445237ENST00000447463ENST00000450805ENST00000459625ENST00000463732ENST00000470668ENST00000471235ENST00000477203ENST00000477937ENST00000485796ENST00000488927ENST00000491464ENST00000547259ENST00000548080ENST00000548938ENST00000549883ENST00000552960ENSG00000111424ENST00000229022ENST00000395324ENST00000546653ENST00000547065ENST00000548664ENST00000549336ENST00000550314ENST00000550325ENSG00000211584ENST00000442218ENST00000442892ENST00000461620ENST00000476104ENST00000547002ENST00000548498ENST00000549243ENST00000551301ENST00000552003ENSG00000268069ENST00000599515ENSG00000274737ENST00000614749ENSG00000278385ENST00000622535CIL_0003DI_0003ENSMUSG00000022475ENSMUST00000079838ENSMUST00000088402ENSMUST00000116408ENSMUST00000116409ENSMUST00000118294ENSMUST00000119670ENSMUST00000120683ENSMUST00000121514ENSMUST00000134258ENSMUST00000135651ENSMUST00000151334ENSMUST00000156045ENSMUSG00000022479ENSMUST00000023119ENSMUST00000126568ENSMUST00000139656ENSMUST00000173104ENSMUST00000173611ENSMUST00000174633ENSMUSG00000081534ENSMUST00000117892ENSMUST00000135073
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DI_0001ENSDARG00000070721ENSDART00000104116ENSDART00000150885ENSDARG00000073850ENSDART00000099842ENSDART00000154151ENSDART00000156667CIL_0003DI_0002ENSG00000061273ENST00000080059ENST00000354334ENST00000459625ENST00000548938ENSG00000111424ENST00000229022ENST00000546653ENST00000547065ENST00000549336ENST00000550314ENST00000550325ENSG00000211584ENST00000442218ENSG00000268069ENST00000599515ENSG00000274737ENST00000614749ENSG00000278385ENST00000622535CIL_0003DI_0003ENSMUSG00000022475ENSMUST00000079838ENSMUST00000088402ENSMUST00000116409ENSMUST00000118294ENSMUST00000121514ENSMUST00000151334ENSMUST00000156045ENSMUSG00000022479ENSMUST00000023119ENSMUST00000126568ENSMUST00000139656ENSMUSG00000081534ENSMUST00000117892
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070721 ENSDART00000104116 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A 0.458±0.00 N/A N/A N/A
ENSDART00000150885 N/A N/A N/A 0.883±0.78 N/A N/A 0.863±0.00 1.470±0.00 0.255±0.00 N/A 0.550±0.00 N/A N/A N/A
ENSDART00000151750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000073850 ENSDART00000099842 N/A N/A N/A 0.260±0.00 N/A N/A 0.265±0.00 0.535±0.00 0.047±0.00 N/A 0.358±0.00 N/A N/A N/A
ENSDART00000154151 N/A N/A N/A 0.182±0.06 N/A N/A 0.517±0.31 3.777±0.86 N/A N/A 0.117±0.00 N/A N/A N/A
ENSDART00000156667 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000061273 ENST00000080059 17.963±0.00 15.860±0.00 N/A N/A N/A 12.045±0.00 N/A N/A 3.648±0.00 13.239±11.37 N/A 23.796±6.05 19.019±4.08 N/A
ENST00000354334 23.324±0.00 20.052±0.00 3.265±0.00 N/A 10.004±8.37 15.275±0.00 11.118±0.00 N/A 2.308±0.00 24.565±0.00 N/A 39.127±0.00 16.118±2.33 10.808±0.00
ENST00000380610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459625 N/A N/A N/A N/A 1.189±0.00 N/A N/A N/A N/A 1.160±0.00 N/A N/A N/A N/A
ENST00000463732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548938 N/A 22.436±0.00 N/A N/A N/A 2.443±0.00 N/A 1.466±0.00 N/A 22.313±0.00 N/A 29.273±3.10 26.384±0.00 10.581±0.25
ENST00000549883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000111424 ENST00000229022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.433±0.00 0.303±0.00 N/A
ENST00000395324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546653 N/A N/A N/A N/A 1.242±0.00 N/A N/A 0.066±0.00 N/A N/A N/A 1.907±0.00 N/A N/A
ENST00000547065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.140±0.00 N/A 0.731±0.00
ENST00000548664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549336 1.377±0.00 N/A 0.875±0.00 0.068±0.00 2.093±0.00 2.184±0.03 N/A 1.401±1.39 N/A N/A N/A 0.889±0.52 1.157±0.10 0.526±0.00
ENST00000550314 N/A N/A N/A N/A N/A N/A N/A N/A 1.575±0.00 1.566±0.00 N/A N/A N/A N/A
ENST00000550325 N/A N/A 1.228±0.00 N/A 0.419±0.00 2.202±0.00 0.033±0.00 N/A 0.277±0.00 0.799±0.00 N/A 0.311±0.00 N/A N/A
ENSG00000211584 ENST00000442218 26.369±0.00 17.925±0.00 5.209±0.00 43.840±22.78 29.579±0.00 10.406±7.36 14.759±0.00 40.181±38.00 6.250±0.87 15.236±12.31 27.396±0.00 43.339±11.46 18.825±3.65 13.399±5.11
ENST00000442892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000268069 ENST00000599515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.710±0.00 N/A N/A N/A
ENSG00000274737 ENST00000614749 0.037±0.00 0.425±0.00 N/A 0.045±0.00 N/A N/A 0.219±0.00 0.200±0.00 N/A 0.147±0.00 N/A 0.346±0.12 0.156±0.00 0.140±0.03
ENSG00000278385 ENST00000622535 0.017±0.00 0.053±0.00 0.371±0.00 0.020±0.00 0.377±0.09 0.360±0.29 0.075±0.00 0.556±0.00 0.016±0.00 0.097±0.00 N/A 0.315±0.14 0.155±0.04 2.708±1.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022475 ENSMUST00000079838 16.890±0.44 30.058±8.18 N/A N/A 25.985±5.41 8.293±0.88 8.157±0.04 9.668±0.00 N/A 47.686±11.39 N/A 25.350±3.81 N/A 1.193±0.00
ENSMUST00000088402 10.356±0.33 N/A 12.143±1.13 11.523±1.74 11.583±0.00 N/A 6.754±1.15 N/A 3.122±0.00 17.387±0.25 3.862±0.32 5.077±0.00 1.427±0.55 1.233±0.00
ENSMUST00000116408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000116409 N/A 17.127±0.42 N/A 10.542±0.00 N/A N/A N/A N/A N/A N/A N/A 11.898±0.00 1.119±0.00 1.192±0.00
ENSMUST00000118294 N/A N/A N/A N/A N/A N/A 3.993±0.00 N/A N/A N/A N/A N/A 1.360±0.30 N/A
ENSMUST00000119670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.582±0.00 N/A
ENSMUST00000134258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151334 N/A N/A N/A N/A 24.715±0.00 N/A N/A N/A N/A N/A N/A 17.967±6.35 3.022±1.81 0.719±0.00
ENSMUST00000156045 N/A 30.849±2.01 N/A N/A 31.461±0.58 6.495±0.55 N/A N/A N/A 37.806±13.69 N/A 15.434±1.04 N/A N/A
ENSMUSG00000022479 ENSMUST00000023119 0.466±0.26 2.542±1.04 0.548±0.01 0.064±0.06 3.148±0.29 79.808±3.38 0.628±0.19 41.876±5.19 0.024±0.01 2.214±0.20 0.039±0.03 1.377±0.32 1.717±0.96 1.503±0.41
ENSMUST00000126568 N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139656 N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081534 ENSMUST00000117892 121.642±58.72 121.681±3.54 48.847±6.24 21.809±4.58 77.797±8.74 33.862±3.47 32.225±6.28 91.320±8.45 37.217±11.96 89.611±6.25 15.726±7.82 62.491±16.57 5.947±4.53 7.705±3.47
ENSMUST00000135073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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