C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group AT-hook 1b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000070951 hmga1b 7955 + 6:54097469-54108141 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000104603 hmga1b-201 54098066-54108139 protein_coding
  ENSDART00000154115 hmga1b-001 54097469-54108141 protein_coding
  ENSDART00000156554 hmga1b-002 54097472-54103020 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000104603ENSDART00000154115
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000104603 10.902±2.15 1.513±0.68 0.617±0.41 N/A 3.060±0.00
ENSDART00000154115 17.782±2.77 2.836±0.80 N/A 0.290±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000137309 HMGA1 high mobility group AT-hook 1 protein_coding Homo_sapiens
ENSMUSG00000046711 Hmga1 high mobility group AT-hook 1 protein_coding Mus_musculus
ENSMUSG00000078249 Hmga1-rs1 high mobility group AT-hook I, related sequence 1 protein_coding Mus_musculus

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