C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec61 beta subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000076568 sec61b 7955 + 16:29452307-29459898 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000059013 sec61b-001 29452307-29459898 protein_coding
  ENSDART00000136980 sec61b-002 29452608-29459807 protein_coding
  ENSDART00000137408 sec61b-004 29452611-29455280 retained_intron
  ENSDART00000146936 sec61b-005 29453423-29459813 processed_transcript
  ENSDART00000147416 sec61b-003 29452775-29453484 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000059013ENSDART00000136980ENSDART00000137408ENSDART00000146936
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000059013 14.175±6.96 12.745±12.10 14.835±0.00 29.408±0.00 14.885±0.00
ENSDART00000136980 N/A 50.043±0.00 N/A 22.638±0.00 15.898±0.00
ENSDART00000137408 0.711±0.00 0.498±0.24 N/A N/A N/A
ENSDART00000146936 6.522±0.71 23.665±0.00 36.617±4.53 N/A 9.676±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HH CIL_0007HH_0001 CGP 16:29444177-29459898
CIL_0007HI CIL_0007HI_0001 CGP 16:29452307-29597577

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000106803 SEC61B Sec61 beta subunit protein_coding Homo_sapiens
ENSMUSG00000053317 Sec61b Sec61 beta subunit protein_coding Mus_musculus
ENSMUSG00000092116 Gm10320 predicted pseudogene 10320 protein_coding Mus_musculus

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