C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec61 beta subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053317 Sec61b 10090 + 4:47474658-47483242 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065678 Sec61b-001 47474658-47483242 protein_coding
  ENSMUST00000125622 Sec61b-002 47474808-47483094 protein_coding
  ENSMUST00000136685 Sec61b-004 47474948-47480791 retained_intron
  ENSMUST00000137461 Sec61b-003 47474764-47483128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065678ENSMUST00000137461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065678 85.458±7.02 326.885±32.20 90.316±17.97 69.325±39.18 105.301±52.98 265.764±33.41 12.654±4.87 68.489±3.75 165.130±48.08 110.344±28.66 27.357±3.30 145.999±34.61 186.226±59.28 21.722±7.21
ENSMUST00000137461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 68.647±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HH CIL_0007HH_0003 CGP 4:47465067-47483242
CIL_0007HI CIL_0007HI_0003 CGP 4:47474658-48086447

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0043022 IDA ribosome binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076568 sec61b Sec61 beta subunit protein_coding Danio_rerio
ENSG00000106803 SEC61B Sec61 beta subunit protein_coding Homo_sapiens

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