C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: partner and localizer of BRCA2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000076716 palb2 7955 - 1:8201107-8210129 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000113013 palb2-001 8201107-8206220 protein_coding
  ENSDART00000128550 palb2-201 8201289-8209827 protein_coding
  ENSDART00000142132 palb2-002 8208419-8210129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000113013ENSDART00000128550ENSDART00000142132
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000113013 0.089±0.04 0.095±0.04 2.641±0.00 N/A 0.217±0.00
ENSDART00000128550 0.365±0.24 0.052±0.01 1.299±0.00 0.386±0.00 0.311±0.00
ENSDART00000142132 0.419±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VC CIL_0003VC_0001 CGP 1:8194184-8210129

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000083093 PALB2 partner and localizer of BRCA2 protein_coding Homo_sapiens
ENSMUSG00000044702 Palb2 partner and localizer of BRCA2 protein_coding Mus_musculus

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