C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058463-ENSDARG00000076716 CGP 7955 1:8194184-8210129
GeneTranscriptPositionBiotype
ENSDARG00000058463 (ndufab1a)
NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1a 		ENSDART00000081337 (ndufab1a-001) 8194184-8199549 protein_coding
ENSDART00000139516 (ndufab1a-002) 8194184-8194755 processed_transcript
ENSDARG00000076716 (palb2)
partner and localizer of BRCA2 		ENSDART00000113013 (palb2-001) 8201107-8206220 protein_coding
ENSDART00000128550 (palb2-201) 8201289-8209827 protein_coding
ENSDART00000142132 (palb2-002) 8208419-8210129 protein_coding
CIL_0003VC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000004779-ENSG00000083093 CGP 9606 16:23581002-23641310
GeneTranscriptPositionBiotype
ENSG00000004779 (NDUFAB1)
NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 		ENST00000007516 (NDUFAB1-001) 23581002-23596356 protein_coding
ENST00000484769 (NDUFAB1-002) 23581033-23596303 nonsense_mediated_decay
ENST00000562133 (NDUFAB1-004) 23581014-23596277 protein_coding
ENST00000567761 (NDUFAB1-003) 23582335-23591153 protein_coding
ENST00000570319 (NDUFAB1-005) 23581871-23596291 protein_coding
ENSG00000083093 (PALB2)
partner and localizer of BRCA2 		ENST00000261584 (PALB2-001) 23603170-23641310 protein_coding
ENST00000561514 (PALB2-006) 23636283-23640851 protein_coding
ENST00000565038 (PALB2-004) 23624071-23637935 nonsense_mediated_decay
ENST00000566069 (PALB2-005) 23603160-23621389 protein_coding
ENST00000567003 (PALB2-003) 23636035-23641301 processed_transcript
ENST00000568219 (PALB2-002) 23603168-23641285 nonsense_mediated_decay
CIL_0003VC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030869-ENSMUSG00000044702 CGP 10090 7:122085403-122132946
GeneTranscriptPositionBiotype
ENSMUSG00000030869 (Ndufab1)
NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 		ENSMUST00000033157 (Ndufab1-001) 122085403-122101886 protein_coding
ENSMUST00000106471 (Ndufab1-006) 122090831-122101736 protein_coding
ENSMUST00000123296 (Ndufab1-002) 122090056-122101851 protein_coding
ENSMUST00000130857 (Ndufab1-008) 122090818-122093092 retained_intron
ENSMUST00000130904 (Ndufab1-005) 122090833-122093782 retained_intron
ENSMUST00000139456 (Ndufab1-007) 122091526-122101735 protein_coding
ENSMUST00000145863 (Ndufab1-009) 122094032-122101347 processed_transcript
ENSMUST00000146022 (Ndufab1-003) 122096463-122101828 retained_intron
ENSMUST00000146964 (Ndufab1-010) 122088458-122091787 retained_intron
ENSMUST00000153173 (Ndufab1-004) 122093125-122101706 retained_intron
ENSMUSG00000044702 (Palb2)
partner and localizer of BRCA2 		ENSMUST00000063587 (Palb2-003) 122107262-122132909 protein_coding
ENSMUST00000098068 (Palb2-001) 122107262-122132946 protein_coding
ENSMUST00000106468 (Palb2-004) 122111572-122132917 protein_coding
ENSMUST00000106469 (Palb2-002) 122107262-122132844 protein_coding
ENSMUST00000130149 (Palb2-006) 122125582-122132919 protein_coding
ENSMUST00000131657 (Palb2-007) 122107267-122124445 nonsense_mediated_decay
ENSMUST00000142952 (Palb2-005) 122111572-122132888 nonsense_mediated_decay
ENSMUST00000154508 (Palb2-008) 122107265-122112040 retained_intron
ENSMUSG00000089631 (Gm16326)
predicted gene 16326 		ENSMUST00000162843 (Gm16326-001) 122131092-122131505 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VC_0001ENSDARG00000058463ENSDART00000081337ENSDART00000139516ENSDARG00000076716ENSDART00000113013ENSDART00000128550ENSDART00000142132CIL_0003VC_0002ENSG00000004779ENST00000007516ENST00000484769ENST00000562133ENST00000567761ENST00000570319ENSG00000083093ENST00000261584ENST00000561514ENST00000565038ENST00000566069ENST00000567003ENST00000568219CIL_0003VC_0003ENSMUSG00000030869ENSMUST00000033157ENSMUST00000106471ENSMUST00000123296ENSMUST00000130857ENSMUST00000130904ENSMUST00000139456ENSMUST00000145863ENSMUST00000146022ENSMUST00000146964ENSMUST00000153173ENSMUSG00000044702ENSMUST00000063587ENSMUST00000098068ENSMUST00000106468ENSMUST00000106469ENSMUST00000130149ENSMUST00000131657ENSMUST00000142952ENSMUST00000154508ENSMUSG00000089631ENSMUST00000162843
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VC_0001ENSDARG00000058463ENSDART00000081337ENSDART00000139516ENSDARG00000076716ENSDART00000113013ENSDART00000128550ENSDART00000142132CIL_0003VC_0002ENSG00000004779ENST00000007516ENST00000484769ENST00000562133ENSG00000083093ENST00000261584ENST00000566069ENST00000568219CIL_0003VC_0003ENSMUSG00000030869ENSMUST00000033157ENSMUST00000106471ENSMUST00000123296ENSMUST00000130857ENSMUST00000130904ENSMUST00000139456ENSMUST00000146022ENSMUST00000153173ENSMUSG00000044702ENSMUST00000063587ENSMUST00000098068ENSMUST00000106468ENSMUST00000106469ENSMUST00000130149ENSMUST00000131657ENSMUST00000142952ENSMUST00000154508ENSMUSG00000089631ENSMUST00000162843
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058463 ENSDART00000081337 N/A N/A N/A 87.369±31.45 N/A N/A 71.225±48.67 17.686±10.08 7.219±0.00 N/A 60.084±0.00 N/A N/A N/A
ENSDART00000139516 N/A N/A N/A N/A N/A N/A 4.306±1.13 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076716 ENSDART00000113013 N/A N/A N/A 0.089±0.04 N/A N/A 0.095±0.04 2.641±0.00 N/A N/A 0.217±0.00 N/A N/A N/A
ENSDART00000128550 N/A N/A N/A 0.365±0.24 N/A N/A 0.052±0.01 1.299±0.00 0.386±0.00 N/A 0.311±0.00 N/A N/A N/A
ENSDART00000142132 N/A N/A N/A 0.419±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004779 ENST00000007516 21.354±0.00 31.280±0.00 6.754±0.00 40.178±3.64 30.455±20.29 26.774±10.28 112.210±63.09 30.510±7.66 31.375±20.83 17.595±8.90 47.497±5.51 50.796±33.59 83.125±28.71 64.928±32.08
ENST00000484769 N/A N/A N/A N/A 1.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562133 N/A 8.485±0.00 N/A 11.451±0.00 N/A 15.113±0.00 N/A 28.973±0.00 N/A 5.349±0.00 N/A 18.188±0.00 N/A 16.872±0.00
ENST00000567761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000083093 ENST00000261584 0.831±0.00 0.698±0.00 N/A N/A 1.405±0.34 0.858±0.35 0.334±0.04 0.326±0.00 1.613±0.00 0.700±0.60 0.615±0.02 1.322±0.67 0.637±0.12 2.381±0.98
ENST00000561514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566069 N/A 1.698±0.00 N/A N/A N/A 0.810±0.00 N/A N/A 1.311±0.00 N/A 1.159±0.00 1.379±0.00 0.751±0.00 3.381±0.00
ENST00000567003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568219 N/A 0.567±0.00 0.220±0.00 1.436±0.00 N/A 0.367±0.00 0.614±0.00 1.337±0.00 0.650±0.00 N/A 0.605±0.00 1.072±0.44 1.414±0.00 4.339±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030869 ENSMUST00000033157 7.124±0.19 N/A 2.134±0.24 1.862±0.18 3.861±2.08 N/A 5.540±0.07 N/A 2.831±0.64 3.562±0.22 3.742±0.43 2.023±0.27 3.059±0.60 N/A
ENSMUST00000106471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.076±0.00 31.318±0.07 36.101±0.00 N/A
ENSMUST00000123296 39.362±0.00 355.697±255.54 N/A N/A 223.962±136.70 102.462±35.99 N/A 115.496±80.57 3.537±0.00 26.046±10.66 14.920±0.00 128.140±86.86 N/A 8.136±0.00
ENSMUST00000130857 N/A N/A 4.504±1.05 5.296±0.00 N/A N/A N/A N/A 3.498±0.55 N/A N/A 5.299±0.84 N/A N/A
ENSMUST00000130904 N/A N/A 33.784±4.61 104.590±103.58 25.500±0.00 N/A 80.449±2.08 N/A 55.174±11.67 N/A 61.791±9.56 112.837±89.20 121.254±112.53 57.196±0.00
ENSMUST00000139456 N/A N/A N/A 72.429±0.00 N/A N/A N/A N/A 48.053±0.00 N/A 105.301±40.72 75.862±0.00 89.508±40.10 21.503±9.41
ENSMUST00000145863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146022 178.299±49.85 1206.641±567.10 N/A 27.060±0.00 335.093±39.07 248.026±37.41 273.589±37.21 293.518±69.97 114.453±36.64 87.822±17.70 N/A 167.767±112.78 N/A 34.482±11.20
ENSMUST00000146964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.609±0.00 8.711±0.00 N/A
ENSMUSG00000044702 ENSMUST00000063587 N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000098068 N/A 0.430±0.10 0.194±0.01 1.034±0.03 0.113±0.00 0.624±0.12 0.040±0.01 0.160±0.09 1.765±1.21 N/A 0.067±0.02 0.352±0.20 1.071±0.61 0.685±0.00
ENSMUST00000106468 0.331±0.09 0.123±0.03 N/A 0.168±0.05 0.463±0.00 0.409±0.17 N/A N/A 0.405±0.00 N/A 0.053±0.00 0.366±0.16 0.485±0.20 0.368±0.10
ENSMUST00000106469 0.565±0.23 0.330±0.06 0.185±0.00 0.301±0.15 0.576±0.22 0.419±0.22 0.078±0.03 0.271±0.08 0.978±1.14 0.097±0.02 0.104±0.00 1.031±0.57 0.818±0.42 0.616±0.35
ENSMUST00000130149 N/A 0.105±0.03 N/A 0.040±0.00 0.096±0.00 N/A 0.030±0.01 N/A 0.023±0.00 0.126±0.02 0.039±0.02 0.194±0.01 N/A N/A
ENSMUST00000131657 N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A 0.837±0.00 0.887±0.55 N/A
ENSMUST00000142952 0.355±0.09 N/A 0.169±0.00 N/A 0.512±0.27 0.296±0.00 N/A 0.248±0.00 0.098±0.06 0.073±0.00 0.104±0.00 0.434±0.01 0.331±0.21 N/A
ENSMUST00000154508 N/A N/A N/A 1.874±0.00 N/A N/A 0.227±0.06 N/A 0.326±0.20 N/A 0.257±0.06 N/A N/A 1.961±0.00
ENSMUSG00000089631 ENSMUST00000162843 N/A 0.395±0.00 0.177±0.00 0.118±0.00 0.377±0.00 0.346±0.01 N/A 0.170±0.00 0.225±0.09 N/A 0.239±0.00 0.360±0.00 0.314±0.28 0.341±0.05

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