C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: partner and localizer of BRCA2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044702 Palb2 10090 - 7:122107262-122132946 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000063587 Palb2-003 122107262-122132909 protein_coding
  ENSMUST00000098068 Palb2-001 122107262-122132946 protein_coding
  ENSMUST00000106468 Palb2-004 122111572-122132917 protein_coding
  ENSMUST00000106469 Palb2-002 122107262-122132844 protein_coding
  ENSMUST00000130149 Palb2-006 122125582-122132919 protein_coding
  ENSMUST00000131657 Palb2-007 122107267-122124445 nonsense_mediated_decay
  ENSMUST00000142952 Palb2-005 122111572-122132888 nonsense_mediated_decay
  ENSMUST00000154508 Palb2-008 122107265-122112040 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063587ENSMUST00000098068ENSMUST00000106468ENSMUST00000106469ENSMUST00000130149ENSMUST00000131657ENSMUST00000142952ENSMUST00000154508
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063587 N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000098068 N/A 0.430±0.10 0.194±0.01 1.034±0.03 0.113±0.00 0.624±0.12 0.040±0.01 0.160±0.09 1.765±1.21 N/A 0.067±0.02 0.352±0.20 1.071±0.61 0.685±0.00
ENSMUST00000106468 0.331±0.09 0.123±0.03 N/A 0.168±0.05 0.463±0.00 0.409±0.17 N/A N/A 0.405±0.00 N/A 0.053±0.00 0.366±0.16 0.485±0.20 0.368±0.10
ENSMUST00000106469 0.565±0.23 0.330±0.06 0.185±0.00 0.301±0.15 0.576±0.22 0.419±0.22 0.078±0.03 0.271±0.08 0.978±1.14 0.097±0.02 0.104±0.00 1.031±0.57 0.818±0.42 0.616±0.35
ENSMUST00000130149 N/A 0.105±0.03 N/A 0.040±0.00 0.096±0.00 N/A 0.030±0.01 N/A 0.023±0.00 0.126±0.02 0.039±0.02 0.194±0.01 N/A N/A
ENSMUST00000131657 N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A 0.837±0.00 0.887±0.55 N/A
ENSMUST00000142952 0.355±0.09 N/A 0.169±0.00 N/A 0.512±0.27 0.296±0.00 N/A 0.248±0.00 0.098±0.06 0.073±0.00 0.104±0.00 0.434±0.01 0.331±0.21 N/A
ENSMUST00000154508 N/A N/A N/A 1.874±0.00 N/A N/A 0.227±0.06 N/A 0.326±0.20 N/A 0.257±0.06 N/A N/A 1.961±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VC CIL_0003VC_0003 CGP 7:122085403-122132946
CIL_0006D1 CIL_0006D1_0002 CGP 7:122107262-122149044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0001756 IMP somitogenesis
GO:0001833 IMP inner cell mass cell proliferation
GO:0003677 ISS DNA binding
GO:0005634 IEA nucleus
GO:0007498 IMP mesoderm development
GO:0009887 IMP organ morphogenesis
GO:0036342 IMP post-anal tail morphogenesis
GO:0043066 IMP negative regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076716 palb2 partner and localizer of BRCA2 protein_coding Danio_rerio
ENSG00000083093 PALB2 partner and localizer of BRCA2 protein_coding Homo_sapiens

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