C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XII, alpha 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000078322 col12a1a 7955 - 17:50299665-50493156 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000113323 col12a1a-201 50361621-50384471 protein_coding
  ENSDART00000154728 col12a1a-001 50299665-50493156 protein_coding
  ENSDART00000156264 col12a1a-003 50300036-50315039 protein_coding
  ENSDART00000157322 col12a1a-002 50368577-50375105 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000154728ENSDART00000156264ENSDART00000157322
Transcript ID Brain Heart Liver Muscle
ENSDART00000154728 0.260±0.05 0.334±0.10 0.051±0.00 4.952±0.00
ENSDART00000156264 N/A 3.105±0.00 N/A N/A
ENSDART00000157322 N/A N/A 0.240±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000624 CIL_000624_0002 CGP 17:50299665-50509536

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005581 IEA collagen

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000111799 COL12A1 collagen, type XII, alpha 1 protein_coding Homo_sapiens
ENSMUSG00000032332 Col12a1 collagen, type XII, alpha 1 protein_coding Mus_musculus

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